KEGG   PATHWAY: eca00020
Entry
eca00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pectobacterium atrosepticum SCRI1043
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eca00020  Citrate cycle (TCA cycle)
eca00020

Module
eca_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eca00020]
eca_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eca00020]
eca_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eca00020]
eca_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eca00020]
eca_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eca00020]
Other DBs
GO: 0006099
Organism
Pectobacterium atrosepticum SCRI1043 [GN:eca]
Gene
ECA4121  citrate synthase [KO:K01647] [EC:2.3.3.1]
ECA1356  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ECA1941  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ECA3778  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECA2439  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ECA1361  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ECA1362  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ECA3787  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECA1364  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
ECA1363  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
ECA1359  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECA1360  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ECA1357  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
ECA1358  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
ECA3969  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECA3970  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
ECA3971  frdC; fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
ECA3972  frdD; fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
ECA0904  fumA; fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
ECA2262  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ECA0685  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECA3082  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ECA4106  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECA3789  aceE; pyruvate dehydrogenase e1 component [KO:K00163] [EC:1.2.4.1]
ECA3788  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ECA2957  nifJ; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
ECA0824  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eca00010  Glycolysis / Gluconeogenesis
eca00053  Ascorbate and aldarate metabolism
eca00061  Fatty acid biosynthesis
eca00071  Fatty acid degradation
eca00190  Oxidative phosphorylation
eca00220  Arginine biosynthesis
eca00250  Alanine, aspartate and glutamate metabolism
eca00280  Valine, leucine and isoleucine degradation
eca00350  Tyrosine metabolism
eca00470  D-Amino acid metabolism
eca00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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