KEGG   PATHWAY: ecob00020
Entry
ecob00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli B C3029
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ecob00020  Citrate cycle (TCA cycle)
ecob00020

Module
ecob_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ecob00020]
ecob_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ecob00020]
ecob_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ecob00020]
ecob_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ecob00020]
ecob_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ecob00020]
Other DBs
GO: 0006099
Organism
Escherichia coli B C3029 [GN:ecob]
Gene
C3029_07235  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
C3029_10815  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
C3029_04340  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C3029_10150  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C3029_07270  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
C3029_07275  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
C3029_04330  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3029_07285  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C3029_07280  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C3029_07255  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
C3029_07260  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C3029_07245  sdhC; succinate dehydrogenase [KO:K00241]
C3029_07250  sdhD; succinate dehydrogenase [KO:K00242]
C3029_02470  fumarate reductase [KO:K00244] [EC:1.3.5.1]
C3029_02465  fumarate reductase [KO:K00245] [EC:1.3.5.1]
C3029_02460  fumarate reductase [KO:K00246]
C3029_02455  fumarate reductase [KO:K00247]
C3029_12410  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3029_02285  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C3029_12405  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C3029_12740  hypothetical protein [KO:K01675] [EC:4.2.1.2]
C3029_18390  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
C3029_20165  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3029_15240  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
C3029_21035  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
C3029_04320  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
C3029_04325  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
C3029_11325  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ecob00010  Glycolysis / Gluconeogenesis
ecob00053  Ascorbate and aldarate metabolism
ecob00061  Fatty acid biosynthesis
ecob00071  Fatty acid degradation
ecob00190  Oxidative phosphorylation
ecob00220  Arginine biosynthesis
ecob00250  Alanine, aspartate and glutamate metabolism
ecob00280  Valine, leucine and isoleucine degradation
ecob00350  Tyrosine metabolism
ecob00470  D-Amino acid metabolism
ecob00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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