KEGG   PATHWAY: elio00020
Entry
elio00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Elioraea tepida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elio00020  Citrate cycle (TCA cycle)
elio00020

Module
elio_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elio00020]
elio_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elio00020]
Other DBs
GO: 0006099
Organism
Elioraea tepida [GN:elio]
Gene
KO353_11900  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
KO353_03440  citrate synthase [KO:K01647] [EC:2.3.3.1]
KO353_05095  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KO353_05755  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KO353_05745  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KO353_00795  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KO353_08140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KO353_10175  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KO353_10180  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KO353_09135  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KO353_09130  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KO353_09145  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KO353_09140  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KO353_01275  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
KO353_01305  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
KO353_01300  succinate dehydrogenase [KO:K00246]
KO353_01295  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00247]
KO353_04815  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KO353_10185  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KO353_15565  transketolase [KO:K00163] [EC:1.2.4.1]
KO353_00780  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KO353_00785  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KO353_00790  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elio00010  Glycolysis / Gluconeogenesis
elio00053  Ascorbate and aldarate metabolism
elio00061  Fatty acid biosynthesis
elio00071  Fatty acid degradation
elio00190  Oxidative phosphorylation
elio00220  Arginine biosynthesis
elio00250  Alanine, aspartate and glutamate metabolism
elio00280  Valine, leucine and isoleucine degradation
elio00350  Tyrosine metabolism
elio00470  D-Amino acid metabolism
elio00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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