KEGG   PATHWAY: eln00020
Entry
eln00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O83:H1 NRG 857C (AIEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eln00020  Citrate cycle (TCA cycle)
eln00020

Module
eln_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eln00020]
eln_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eln00020]
eln_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eln00020]
eln_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eln00020]
eln_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eln00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O83:H1 NRG 857C (AIEC) [GN:eln]
Gene
NRG857_03205  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
NRG857_06560  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NRG857_03425  hypothetical protein [KO:K01681] [EC:4.2.1.3]
NRG857_00615  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NRG857_05485  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NRG857_03230  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NRG857_20255  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NRG857_03235  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
NRG857_20260  dihydrolipoamide succinyltransferase (E2 component) [KO:K00658] [EC:2.3.1.61]
NRG857_00605  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
NRG857_20265  putative pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
NRG857_03245  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
NRG857_20275  Succinyl-CoA synthetase alpha chain (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
NRG857_03240  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
NRG857_20270  Succinyl-CoA synthetase beta chain (SCS-beta) [KO:K01903] [EC:6.2.1.5]
NRG857_03220  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NRG857_03225  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NRG857_03210  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
NRG857_03215  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
NRG857_21140  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NRG857_21135  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NRG857_21130  fumarate reductase subunit C [KO:K00246]
NRG857_21125  fumarate reductase subunit D [KO:K00247]
NRG857_08075  fumarate hydratase (fumarase A), aerobic Class I [KO:K01676] [EC:4.2.1.2]
NRG857_20675  anaerobic class I fumarate hydratase (fumarase B) [KO:K01676] [EC:4.2.1.2]
NRG857_08070  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NRG857_08390  hypothetical protein [KO:K01675] [EC:4.2.1.2]
NRG857_14385  putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
NRG857_16015  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NRG857_11215  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NRG857_16845  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
NRG857_00595  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
NRG857_00600  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
NRG857_06920  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eln00010  Glycolysis / Gluconeogenesis
eln00053  Ascorbate and aldarate metabolism
eln00061  Fatty acid biosynthesis
eln00071  Fatty acid degradation
eln00190  Oxidative phosphorylation
eln00220  Arginine biosynthesis
eln00250  Alanine, aspartate and glutamate metabolism
eln00280  Valine, leucine and isoleucine degradation
eln00350  Tyrosine metabolism
eln00470  D-Amino acid metabolism
eln00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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