KEGG   PATHWAY: emc00030
Entry
emc00030                    Pathway                                
Name
Pentose phosphate pathway - Eublepharis macularius (Leopard gecko)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
emc00030  Pentose phosphate pathway
emc00030

Module
emc_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:emc00030]
emc_M00005  PRPP biosynthesis, ribose-5P => PRPP [PATH:emc00030]
emc_M00006  Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P [PATH:emc00030]
emc_M00007  Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P [PATH:emc00030]
Other DBs
GO: 0006098
Organism
Eublepharis macularius (Leopard gecko) [GN:emc]
Gene
129324278  TALDO1; transaldolase [KO:K00616] [EC:2.2.1.2]
129325249  RPE; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
129325565  PRPS2; ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
129325734  [KO:K01053] [EC:3.1.1.17]
129325939  [KO:K01053] [EC:3.1.1.17]
129326135  [KO:K01623] [EC:4.1.2.13]
129326948  GLYCTK; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
129329256  RBKS; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
129329294  TKT; transketolase [KO:K00615] [EC:2.2.1.1]
129331361  PGM1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
129331958  PFKL; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
129334284  [KO:K03841] [EC:3.1.3.11]
129334546  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
129334632  IDNK; probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
129335202  [KO:K03841] [EC:3.1.3.11]
129336181  DERA; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
129337418  RPIA; ribose-5-phosphate isomerase isoform X1 [KO:K01807] [EC:5.3.1.6]
129337899  PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
129338576  ALDOA; fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
129341671  PRPS1; ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
129342581  PGM2; phosphopentomutase [KO:K15779] [EC:5.4.2.2 5.4.2.7]
129343927  GPI; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
129344481  PGD; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
129344695  ALDOC; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
129344747  SHPK; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
129344813  H6PD; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
129346129  [KO:K00850] [EC:2.7.1.11]
129346155  G6PD; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
129346243  TKTL1; transketolase-like protein 1 [KO:K00615] [EC:2.2.1.1]
129346251  PGLS; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
emc00010  Glycolysis / Gluconeogenesis
emc00040  Pentose and glucuronate interconversions
emc00052  Galactose metabolism
emc00230  Purine metabolism
emc00240  Pyrimidine metabolism
emc00340  Histidine metabolism
emc00630  Glyoxylate and dicarboxylate metabolism
emc00750  Vitamin B6 metabolism
KO pathway
ko00030   

DBGET integrated database retrieval system