KEGG   PATHWAY: enz00020
Entry
enz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter sp. T2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
enz00020  Citrate cycle (TCA cycle)
enz00020

Module
enz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:enz00020]
enz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:enz00020]
enz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:enz00020]
enz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:enz00020]
enz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:enz00020]
Other DBs
GO: 0006099
Organism
Enterobacter sp. T2 [GN:enz]
Gene
G0034_01820  frdD; fumarate reductase subunit FrdD [KO:K00247]
G0034_01825  frdC; fumarate reductase subunit FrdC [KO:K00246]
G0034_01830  [KO:K00245] [EC:1.3.5.1]
G0034_01835  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
G0034_03780  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
G0034_03785  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
G0034_03790  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G0034_03810  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
G0034_06370  [KO:K01647] [EC:2.3.3.1]
G0034_06375  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
G0034_06380  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
G0034_06385  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G0034_06390  [KO:K00240] [EC:1.3.5.1]
G0034_06395  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G0034_06400  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G0034_06405  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G0034_06410  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G0034_08615  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G0034_09285  fumD; fumarate hydratase FumD [KO:K01675]
G0034_09570  [KO:K01676] [EC:4.2.1.2]
G0034_09575  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G0034_12140  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
G0034_12470  acnA; aconitate hydratase AcnA [KO:K27802]
G0034_14840  [KO:K01676] [EC:4.2.1.2]
G0034_15845  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
G0034_20510  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G0034_21355  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
enz00010  Glycolysis / Gluconeogenesis
enz00053  Ascorbate and aldarate metabolism
enz00061  Fatty acid biosynthesis
enz00071  Fatty acid degradation
enz00190  Oxidative phosphorylation
enz00220  Arginine biosynthesis
enz00250  Alanine, aspartate and glutamate metabolism
enz00280  Valine, leucine and isoleucine degradation
enz00350  Tyrosine metabolism
enz00470  D-Amino acid metabolism
enz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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