KEGG   PATHWAY: equ00020
Entry
equ00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter quasiroggenkampii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
equ00020  Citrate cycle (TCA cycle)
equ00020

Module
equ_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:equ00020]
equ_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:equ00020]
equ_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:equ00020]
equ_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:equ00020]
equ_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:equ00020]
Other DBs
GO: 0006099
Organism
Enterobacter quasiroggenkampii [GN:equ]
Gene
OM418_01935  frdD; fumarate reductase subunit FrdD [KO:K00247]
OM418_01940  frdC; fumarate reductase subunit FrdC [KO:K00246]
OM418_01945  [KO:K00245] [EC:1.3.5.1]
OM418_01950  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
OM418_03705  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OM418_03710  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
OM418_03715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OM418_03740  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
OM418_06135  [KO:K01647] [EC:2.3.3.1]
OM418_06140  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
OM418_06145  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
OM418_06150  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OM418_06155  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
OM418_06160  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
OM418_06165  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
OM418_06170  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
OM418_06175  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
OM418_08475  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
OM418_09205  fumD; fumarate hydratase FumD [KO:K01675]
OM418_09510  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
OM418_09515  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
OM418_11895  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
OM418_12265  acnA; aconitate hydratase AcnA [KO:K27802]
OM418_13945  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
OM418_15110  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
OM418_19945  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OM418_20700  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
equ00010  Glycolysis / Gluconeogenesis
equ00053  Ascorbate and aldarate metabolism
equ00061  Fatty acid biosynthesis
equ00071  Fatty acid degradation
equ00190  Oxidative phosphorylation
equ00220  Arginine biosynthesis
equ00250  Alanine, aspartate and glutamate metabolism
equ00280  Valine, leucine and isoleucine degradation
equ00350  Tyrosine metabolism
equ00470  D-Amino acid metabolism
equ00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system