KEGG   PATHWAY: ern00020
Entry
ern00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter roggenkampii DSM 16690
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ern00020  Citrate cycle (TCA cycle)
ern00020

Module
ern_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ern00020]
ern_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ern00020]
ern_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ern00020]
ern_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ern00020]
ern_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ern00020]
Other DBs
GO: 0006099
Organism
Enterobacter roggenkampii DSM 16690 [GN:ern]
Gene
BFV67_06015  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BFV67_11895  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BFV67_03650  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BFV67_08350  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BFV67_06040  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BFV67_06045  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BFV67_03635  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFV67_06055  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BFV67_06050  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BFV67_06030  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFV67_06035  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BFV67_06020  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BFV67_06025  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BFV67_01975  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BFV67_01970  fumarate reductase [KO:K00245] [EC:1.3.5.1]
BFV67_01965  fumarate reductase subunit C [KO:K00246]
BFV67_01960  fumarate reductase [KO:K00247]
BFV67_09250  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BFV67_13875  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BFV67_09255  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BFV67_08940  hypothetical protein [KO:K01675] [EC:4.2.1.2]
BFV67_19740  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BFV67_15120  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BFV67_20505  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BFV67_03625  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BFV67_03630  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BFV67_11560  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ern00010  Glycolysis / Gluconeogenesis
ern00053  Ascorbate and aldarate metabolism
ern00061  Fatty acid biosynthesis
ern00071  Fatty acid degradation
ern00190  Oxidative phosphorylation
ern00220  Arginine biosynthesis
ern00250  Alanine, aspartate and glutamate metabolism
ern00280  Valine, leucine and isoleucine degradation
ern00350  Tyrosine metabolism
ern00470  D-Amino acid metabolism
ern00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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