KEGG   PATHWAY: ese00020
Entry
ese00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O150:H5 SE15 (commensal)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ese00020  Citrate cycle (TCA cycle)
ese00020

Module
ese_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ese00020]
ese_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ese00020]
ese_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ese00020]
ese_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ese00020]
ese_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ese00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O150:H5 SE15 (commensal) [GN:ese]
Gene
ECSF_0653  citrate synthase [KO:K01647] [EC:2.3.3.1]
ECSF_0697  conserved hypothetical protein [KO:K01681] [EC:4.2.1.3]
ECSF_1258  aconitate hydrase 1 [KO:K01681] [EC:4.2.1.3]
ECSF_0131  aconitate hydrase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ECSF_1036  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ECSF_3916  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ECSF_0658  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ECSF_3917  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
ECSF_0659  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
ECSF_0129  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ECSF_3918  2-oxoglutarate dehydrogenase E3 component [KO:K00382] [EC:1.8.1.4]
ECSF_3920  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
ECSF_0661  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
ECSF_3919  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
ECSF_0660  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
ECSF_0656  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ECSF_0657  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ECSF_0654  succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
ECSF_0655  succinate dehydrogenase hydrophobic subunit [KO:K00242]
ECSF_4044  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ECSF_4043  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
ECSF_4042  fumarate reductase membrane anchor polypeptide [KO:K00246]
ECSF_4041  fumarate reductase membrane anchor polypeptide [KO:K00247]
ECSF_1473  fumarase class I [KO:K01676] [EC:4.2.1.2]
ECSF_4001  fumarase B [KO:K01676] [EC:4.2.1.2]
ECSF_1472  fumarase class II [KO:K01679] [EC:4.2.1.2]
ECSF_1535  conserved hypothetical protein [KO:K01675] [EC:4.2.1.2]
ECSF_2726  putative transcriptional regulator [KO:K01774] [EC:4.2.1.2]
ECSF_3060  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ECSF_2092  conserved hypothetical protein [KO:K00116] [EC:1.1.5.4]
ECSF_3225  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ECSF_0127  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ECSF_0128  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
ECSF_1330  putative oxidoreductase Fe-S subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ese00010  Glycolysis / Gluconeogenesis
ese00053  Ascorbate and aldarate metabolism
ese00061  Fatty acid biosynthesis
ese00071  Fatty acid degradation
ese00190  Oxidative phosphorylation
ese00220  Arginine biosynthesis
ese00250  Alanine, aspartate and glutamate metabolism
ese00280  Valine, leucine and isoleucine degradation
ese00350  Tyrosine metabolism
ese00470  D-Amino acid metabolism
ese00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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