KEGG   PATHWAY: eso00020
Entry
eso00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Escherichia coli O104:H4 2009EL-2071 (EAEC)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eso00020  Citrate cycle (TCA cycle)
eso00020

Module
eso_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eso00020]
eso_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eso00020]
eso_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eso00020]
eso_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eso00020]
eso_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eso00020]
Other DBs
GO: 0006099
Organism
Escherichia coli O104:H4 2009EL-2071 (EAEC) [GN:eso]
Gene
O3O_07250  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
O3O_07475  putative hydratase [KO:K01681] [EC:4.2.1.3]
O3O_11670  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
O3O_04410  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
O3O_10740  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
O3O_07275  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
O3O_07280  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
O3O_04400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
O3O_07290  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
O3O_07285  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
O3O_07265  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
O3O_07270  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
O3O_07255  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
O3O_07260  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
O3O_02525  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
O3O_02520  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
O3O_02515  fumarate reductase subunit C [KO:K00246]
O3O_02510  fumarate reductase subunit D [KO:K00247]
O3O_13460  fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
O3O_02095  fumarate hydratase FumB [KO:K01676] [EC:4.2.1.2]
O3O_13455  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
O3O_13775  hypothetical protein [KO:K01675] [EC:4.2.1.2]
O3O_20850  putative DNA-binding transcriptional regulator [KO:K01774] [EC:4.2.1.2]
O3O_22860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
O3O_17240  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
O3O_23595  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
O3O_04390  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
O3O_04395  aceF; pyruvate dehydrogenase dihydrolipoyltransacetylase [KO:K00627] [EC:2.3.1.12]
O3O_12045  2-oxoacid-flavodoxin fused oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eso00010  Glycolysis / Gluconeogenesis
eso00053  Ascorbate and aldarate metabolism
eso00061  Fatty acid biosynthesis
eso00071  Fatty acid degradation
eso00190  Oxidative phosphorylation
eso00220  Arginine biosynthesis
eso00250  Alanine, aspartate and glutamate metabolism
eso00280  Valine, leucine and isoleucine degradation
eso00350  Tyrosine metabolism
eso00470  D-Amino acid metabolism
eso00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system