KEGG   PATHWAY: etr00020
Entry
etr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Edwardsiella piscicida EIB202
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
etr00020  Citrate cycle (TCA cycle)
etr00020

Module
etr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:etr00020]
etr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:etr00020]
etr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:etr00020]
etr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:etr00020]
etr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:etr00020]
Other DBs
GO: 0006099
Organism
Edwardsiella piscicida EIB202 [GN:etr]
Gene
ETAE_0335  frdD; fumarate reductase subunit D [KO:K00247]
ETAE_0336  frdC; fumarate reductase subunit C [KO:K00246]
ETAE_0337  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
ETAE_0338  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ETAE_0386  mdh; malate/lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ETAE_0659  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
ETAE_0660  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
ETAE_0662  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ETAE_0665  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ETAE_1708  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ETAE_1778  nifJ; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
ETAE_2050  [KO:K00031] [EC:1.1.1.42]
ETAE_2114  [KO:K01676] [EC:4.2.1.2]
ETAE_2503  [KO:K03737] [EC:1.2.7.1 1.2.7.-]
ETAE_2581  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ETAE_2582  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ETAE_2583  sucB; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ETAE_2584  sucA; component of the 2-oxoglutarate dehydrogenase complex,thiamin-binding protein [KO:K00164] [EC:1.2.4.2]
ETAE_2585  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ETAE_2586  sdhA; succinate dehydrogenase catalytic subunit [KO:K00239] [EC:1.3.5.1]
ETAE_2587  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
ETAE_2588  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
ETAE_2589  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ETAE_3277  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ETAE_3478  [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
etr00010  Glycolysis / Gluconeogenesis
etr00053  Ascorbate and aldarate metabolism
etr00061  Fatty acid biosynthesis
etr00071  Fatty acid degradation
etr00190  Oxidative phosphorylation
etr00220  Arginine biosynthesis
etr00250  Alanine, aspartate and glutamate metabolism
etr00280  Valine, leucine and isoleucine degradation
etr00350  Tyrosine metabolism
etr00470  D-Amino acid metabolism
etr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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