KEGG   PATHWAY: exf00020
Entry
exf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Enterobacter hormaechei subsp. xiangfangensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
exf00020  Citrate cycle (TCA cycle)
exf00020

Module
exf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:exf00020]
exf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:exf00020]
exf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:exf00020]
exf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:exf00020]
exf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:exf00020]
Other DBs
GO: 0006099
Organism
Enterobacter hormaechei subsp. xiangfangensis [GN:exf]
Gene
BFV63_06375  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BFV63_12200  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BFV63_03790  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BFV63_08415  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BFV63_06400  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BFV63_06405  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BFV63_03775  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BFV63_06415  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BFV63_06410  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BFV63_06390  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BFV63_06395  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BFV63_06380  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
BFV63_06385  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BFV63_02000  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BFV63_01995  fumarate reductase [KO:K00245] [EC:1.3.5.1]
BFV63_01990  fumarate reductase subunit C [KO:K00246]
BFV63_01985  fumarate reductase [KO:K00247]
BFV63_09945  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BFV63_13965  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BFV63_09950  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BFV63_09470  hypothetical protein [KO:K01675] [EC:4.2.1.2]
BFV63_18260  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
BFV63_19730  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BFV63_14925  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BFV63_20475  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BFV63_03765  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BFV63_03770  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
BFV63_11715  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
exf00010  Glycolysis / Gluconeogenesis
exf00053  Ascorbate and aldarate metabolism
exf00061  Fatty acid biosynthesis
exf00071  Fatty acid degradation
exf00190  Oxidative phosphorylation
exf00220  Arginine biosynthesis
exf00250  Alanine, aspartate and glutamate metabolism
exf00280  Valine, leucine and isoleucine degradation
exf00350  Tyrosine metabolism
exf00470  D-Amino acid metabolism
exf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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