KEGG   PATHWAY: fcy00030
Entry
fcy00030                    Pathway                                
Name
Pentose phosphate pathway - Fragilariopsis cylindrus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fcy00030  Pentose phosphate pathway
fcy00030

Module
fcy_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:fcy00030]
fcy_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:fcy00030]
fcy_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:fcy00030]
fcy_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:fcy00030]
Other DBs
GO: 0006098
Organism
Fragilariopsis cylindrus [GN:fcy]
Gene
FRACYDRAFT_235074  G6PI2; putative glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FRACYDRAFT_240160  G6PI1; putative glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FRACYDRAFT_291634  G6PI3; putative glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FRACYDRAFT_179718  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FRACYDRAFT_207660  G6PD1; putative glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FRACYDRAFT_259433  nagb/rpia/CoA transferase-like protein [KO:K01057] [EC:3.1.1.31]
FRACYDRAFT_220076  nagb/rpia/CoA transferase-like protein [KO:K01057] [EC:3.1.1.31]
FRACYDRAFT_211512  6PGD_1; putative 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FRACYDRAFT_246854  hypothetical protein [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FRACYDRAFT_224823  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
FRACYDRAFT_206407  transketolase [KO:K00615] [EC:2.2.1.1]
FRACYDRAFT_259678  transketolase [KO:K00615] [EC:2.2.1.1]
FRACYDRAFT_207931  transaldolase [KO:K00616] [EC:2.2.1.2]
FRACYDRAFT_207790  ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
FRACYDRAFT_159706  Ribokinase-like protein [KO:K00852] [EC:2.7.1.15]
FRACYDRAFT_263231  PGM2; putative chloroplast phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
FRACYDRAFT_188245  phosphoribosyl pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
FRACYDRAFT_185615  KPRS1_1; putative ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
FRACYDRAFT_235169  calcium-dependent phosphotriesterase [KO:K01053] [EC:3.1.1.17]
FRACYDRAFT_291583  GK1; glycerate kinase [KO:K11529] [EC:2.7.1.165]
FRACYDRAFT_179823  fructose-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
FRACYDRAFT_182808  fructose-1,6-bisphosphate aldolase class I [KO:K01623] [EC:4.1.2.13]
FRACYDRAFT_191311  fructose-bisphosphate aldolase, class I [KO:K01623] [EC:4.1.2.13]
FRACYDRAFT_258994  hypothetical protein [KO:K01624] [EC:4.1.2.13]
FRACYDRAFT_269285  fructose-1,6-biphosphate aldolase precursor [KO:K01624] [EC:4.1.2.13]
FRACYDRAFT_206976  fructose-1,6-bisphosphate aldolase precursor [KO:K01624] [EC:4.1.2.13]
FRACYDRAFT_291638  FBP6; putative fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_264445  FBP4; putative chloroplast fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_170890  FBP3; cytosolic fructose-1,6-bishosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_236085  FBP5; putative fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_261561  FBP2; putative fructose-1,6-bishosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_241883  FBP1; putative fructose-1,6-bishosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_275433  FBP7_1; putative fructose-1,6-bisphosphatase [KO:K03841] [EC:3.1.3.11]
FRACYDRAFT_273844  ATP-PFK1; phosphofructokinase [KO:K00850] [EC:2.7.1.11]
FRACYDRAFT_263182  PPi-PFK1; phosphofructokinase [KO:K00895] [EC:2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
fcy00010  Glycolysis / Gluconeogenesis
fcy00040  Pentose and glucuronate interconversions
fcy00052  Galactose metabolism
fcy00230  Purine metabolism
fcy00240  Pyrimidine metabolism
fcy00340  Histidine metabolism
fcy00630  Glyoxylate and dicarboxylate metabolism
fcy00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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