KEGG   PATHWAY: fcy00630
Entry
fcy00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Fragilariopsis cylindrus
Class
Metabolism; Carbohydrate metabolism
Pathway map
fcy00630  Glyoxylate and dicarboxylate metabolism
fcy00630

Module
fcy_M00621  Glycine cleavage system [PATH:fcy00630]
Other DBs
GO: 0046487 0043648
Organism
Fragilariopsis cylindrus [GN:fcy]
Gene
FRACYDRAFT_239808  ACS; acetate CoA ligase [KO:K01895] [EC:6.2.1.1]
FRACYDRAFT_254980  acetyl-CoA synthetase-like protein [KO:K01895] [EC:6.2.1.1]
FRACYDRAFT_224808  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
FRACYDRAFT_287426  MDH1; putative malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
FRACYDRAFT_275301  MDH2; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
FRACYDRAFT_224559  citrate synthase [KO:K01647] [EC:2.3.3.1]
FRACYDRAFT_274265  ACAT1; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
FRACYDRAFT_136622  Biotin_carb_C-domain-containing protein [KO:K01965] [EC:6.4.1.3]
FRACYDRAFT_167310  beta subunit of propionyl-CoA carboxylase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
FRACYDRAFT_273786  methylmalonyl coenzyme A mutase-like protein [KO:K01847] [EC:5.4.99.2]
FRACYDRAFT_181873  hypothetical protein [KO:K11517] [EC:1.1.3.15]
FRACYDRAFT_169636  NAD(P)-binding protein [KO:K00049] [EC:1.1.1.79 1.1.1.81]
FRACYDRAFT_180727  gamma hydroxybutyrate dehydrogenase-like protein [KO:K18121] [EC:1.1.1.79 1.1.1.-]
FRACYDRAFT_224809  putative p-nitrophenylphosphatase [KO:K19269] [EC:3.1.3.18 3.1.3.48]
FRACYDRAFT_225787  glutamate synthase family protein [KO:K00284] [EC:1.4.7.1]
FRACYDRAFT_149935  Fc_149935; glutamine synthetase/guanido kinase [KO:K01915] [EC:6.3.1.2]
FRACYDRAFT_228642  plastid glutamine synthetase II [KO:K01915] [EC:6.3.1.2]
FRACYDRAFT_277211  Fc_277211; glutamine synthetase type [KO:K01915] [EC:6.3.1.2]
FRACYDRAFT_291505  cSHMT; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FRACYDRAFT_252263  mSHMT_1; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FRACYDRAFT_277738  cSMHT; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FRACYDRAFT_239548  mSHMT_1; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
FRACYDRAFT_276117  GDCP; glycine cleavage system P-protein [KO:K00281] [EC:1.4.4.2]
FRACYDRAFT_224733  GDCT; mitochondrial glycine decarboxylase T-protein [KO:K00605] [EC:2.1.2.10]
FRACYDRAFT_230231  GDCT; glycine decarboxylase T-protein [KO:K00605] [EC:2.1.2.10]
FRACYDRAFT_271375  DLDH; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRACYDRAFT_186500  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FRACYDRAFT_222240  GDCH; glycine decarboxylase H-protein [KO:K02437]
FRACYDRAFT_275698  GDCH; GCV_H-domain-containing protein [KO:K02437]
FRACYDRAFT_291583  GK1; glycerate kinase [KO:K11529] [EC:2.7.1.165]
FRACYDRAFT_224738  formamidase [KO:K01455] [EC:3.5.1.49]
FRACYDRAFT_225387  acetyl-CoA synthetase-like protein [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
fcy00010  Glycolysis / Gluconeogenesis
fcy00020  Citrate cycle (TCA cycle)
fcy00030  Pentose phosphate pathway
fcy00053  Ascorbate and aldarate metabolism
fcy00071  Fatty acid degradation
fcy00230  Purine metabolism
fcy00250  Alanine, aspartate and glutamate metabolism
fcy00260  Glycine, serine and threonine metabolism
fcy00620  Pyruvate metabolism
fcy00710  Carbon fixation by Calvin cycle
fcy00750  Vitamin B6 metabolism
fcy00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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