KEGG   PATHWAY: ftf00020
Entry
ftf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. tularensis FSC198
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftf00020  Citrate cycle (TCA cycle)
ftf00020

Module
ftf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftf00020]
ftf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftf00020]
ftf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftf00020]
ftf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftf00020]
ftf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftf00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. tularensis FSC198 [GN:ftf]
Gene
FTF0071c  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
FTF0072  sdhC; succinate dehydrogenase, cytochrome b556 [KO:K00241]
FTF0073  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FTF0074  sdhA; succinate dehydrogenase, catalytic and NAD/flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FTF0075  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
FTF0076  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FTF0077  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FTF0087  acnA; aconitate hydratase [KO:K27802]
FTF0306  fumC; fumarate hydratase, Class II [KO:K01679] [EC:4.2.1.2]
FTF0449  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FTF0503c  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
FTF0504c  sucC; Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
FTF0535c  mdh; lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FTF1483c  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FTF1484c  aceF; pyruvate dehydrogenase, E2 component [KO:K00627] [EC:2.3.1.12]
FTF1485c  aceE; pyruvate dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
FTF1526c  idh; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FTF1600c  fumA; fumerate hydratase [KO:K01676] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftf00010  Glycolysis / Gluconeogenesis
ftf00061  Fatty acid biosynthesis
ftf00071  Fatty acid degradation
ftf00190  Oxidative phosphorylation
ftf00220  Arginine biosynthesis
ftf00250  Alanine, aspartate and glutamate metabolism
ftf00280  Valine, leucine and isoleucine degradation
ftf00470  D-Amino acid metabolism
ftf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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