KEGG   PATHWAY: ftz00020
Entry
ftz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Francisella tularensis subsp. holarctica 425
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ftz00020  Citrate cycle (TCA cycle)
ftz00020

Module
ftz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ftz00020]
ftz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ftz00020]
ftz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ftz00020]
ftz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ftz00020]
ftz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ftz00020]
Other DBs
GO: 0006099
Organism
Francisella tularensis subsp. holarctica 425 [GN:ftz]
Gene
CH68_1059  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
CH68_1682  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
CH68_1683  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CH68_1749  [KO:K01610] [EC:4.1.1.49]
CH68_1924  acnA; aconitate hydratase 1 [KO:K27802]
CH68_1936  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CH68_1937  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
CH68_1938  [KO:K00240] [EC:1.3.5.1]
CH68_1939  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CH68_1940  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CH68_1941  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CH68_1942  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CH68_228  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CH68_329  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CH68_330  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CH68_331  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CH68_566  [KO:K01676] [EC:4.2.1.2]
CH68_635  [KO:K00031] [EC:1.1.1.42]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ftz00010  Glycolysis / Gluconeogenesis
ftz00061  Fatty acid biosynthesis
ftz00071  Fatty acid degradation
ftz00190  Oxidative phosphorylation
ftz00220  Arginine biosynthesis
ftz00250  Alanine, aspartate and glutamate metabolism
ftz00280  Valine, leucine and isoleucine degradation
ftz00350  Tyrosine metabolism
ftz00470  D-Amino acid metabolism
ftz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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