KEGG   PATHWAY: gag00020
Entry
gag00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Glaciecola sp. 4H-3-7+YE-5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gag00020  Citrate cycle (TCA cycle)
gag00020

Module
gag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gag00020]
gag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gag00020]
gag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gag00020]
gag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gag00020]
gag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gag00020]
Other DBs
GO: 0006099
Organism
Glaciecola sp. 4H-3-7+YE-5 [GN:gag]
Gene
Glaag_1777  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Glaag_3116  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Glaag_0925  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Glaag_1989  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Glaag_1135  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Glaag_1782  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Glaag_1783  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Glaag_0998  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Glaag_1785  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Glaag_1784  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Glaag_1780  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Glaag_1781  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Glaag_1778  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Glaag_1779  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Glaag_2704  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Glaag_2211  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Glaag_0615  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Glaag_2402  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Glaag_1000  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Glaag_0999  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gag00010  Glycolysis / Gluconeogenesis
gag00053  Ascorbate and aldarate metabolism
gag00061  Fatty acid biosynthesis
gag00071  Fatty acid degradation
gag00190  Oxidative phosphorylation
gag00220  Arginine biosynthesis
gag00250  Alanine, aspartate and glutamate metabolism
gag00280  Valine, leucine and isoleucine degradation
gag00350  Tyrosine metabolism
gag00470  D-Amino acid metabolism
gag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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