KEGG   PATHWAY: gcs00020
Entry
gcs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gracilibacillus caseinilyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gcs00020  Citrate cycle (TCA cycle)
gcs00020

Module
gcs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gcs00020]
gcs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gcs00020]
gcs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gcs00020]
gcs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gcs00020]
Other DBs
GO: 0006099
Organism
Gracilibacillus caseinilyticus [GN:gcs]
Gene
MUN88_04355  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN88_11525  [KO:K00164] [EC:1.2.4.2]
MUN88_11530  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MUN88_11820  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MUN88_12860  [KO:K00116] [EC:1.1.5.4]
MUN88_13910  citZ; citrate synthase [KO:K01659] [EC:2.3.3.5]
MUN88_13915  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MUN88_14105  [KO:K00241]
MUN88_14110  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MUN88_14115  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MUN88_15750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN88_16975  acnA; aconitate hydratase AcnA [KO:K27802]
MUN88_17815  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MUN88_17820  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MUN88_18415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MUN88_18420  [KO:K00627] [EC:2.3.1.12]
MUN88_18425  [KO:K00162] [EC:1.2.4.1]
MUN88_18430  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MUN88_18675  [KO:K27802]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gcs00010  Glycolysis / Gluconeogenesis
gcs00053  Ascorbate and aldarate metabolism
gcs00061  Fatty acid biosynthesis
gcs00071  Fatty acid degradation
gcs00190  Oxidative phosphorylation
gcs00220  Arginine biosynthesis
gcs00250  Alanine, aspartate and glutamate metabolism
gcs00280  Valine, leucine and isoleucine degradation
gcs00350  Tyrosine metabolism
gcs00470  D-Amino acid metabolism
gcs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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