KEGG   PATHWAY: geh00020
Entry
geh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gemmobacter aquarius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
geh00020  Citrate cycle (TCA cycle)
geh00020

Module
geh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:geh00020]
geh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:geh00020]
Other DBs
GO: 0006099
Organism
Gemmobacter aquarius [GN:geh]
Gene
HYN69_07315  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HYN69_11095  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HYN69_08315  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HYN69_13265  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HYN69_13155  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HYN69_07775  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HYN69_13170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HYN69_13135  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HYN69_13080  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HYN69_13065  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HYN69_13090  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HYN69_13085  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HYN69_11565  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HYN69_13125  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HYN69_04335  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HYN69_01715  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HYN69_10855  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HYN69_10860  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HYN69_10865  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
geh00010  Glycolysis / Gluconeogenesis
geh00053  Ascorbate and aldarate metabolism
geh00061  Fatty acid biosynthesis
geh00071  Fatty acid degradation
geh00190  Oxidative phosphorylation
geh00220  Arginine biosynthesis
geh00250  Alanine, aspartate and glutamate metabolism
geh00280  Valine, leucine and isoleucine degradation
geh00350  Tyrosine metabolism
geh00470  D-Amino acid metabolism
geh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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