KEGG   PATHWAY: gfo00020
Entry
gfo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Christiangramia forsetii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gfo00020  Citrate cycle (TCA cycle)
gfo00020

Module
gfo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gfo00020]
gfo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gfo00020]
gfo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gfo00020]
gfo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gfo00020]
gfo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gfo00020]
Other DBs
GO: 0006099
Organism
Christiangramia forsetii [GN:gfo]
Gene
GFO_2807  gltA; class I citrate synthase [KO:K01647] [EC:2.3.3.1]
GFO_1390  acnA; aconitase [KO:K01681] [EC:4.2.1.3]
GFO_1602  aconitase [KO:K01681] [EC:4.2.1.3]
GFO_2504  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GFO_0618  icd; NADP-dependent monomeric type isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GFO_3083  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GFO_3082  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GFO_2250  lipoamide acyltransferase component of 2-oxoacid dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GFO_2165  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFO_1679  lpd; E3 component of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
GFO_1865  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFO_1202  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFO_1768  sucD; succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GFO_0752  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
GFO_3149  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFO_3150  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
GFO_3148  succinate dehydrogenase cytochrome B subunit [KO:K00241]
GFO_1808  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GFO_2747  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GFO_2678  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GFO_0105  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GFO_1681  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
GFO_2889  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GFO_0294  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GFO_2888  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
GFO_1680  aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gfo00010  Glycolysis / Gluconeogenesis
gfo00053  Ascorbate and aldarate metabolism
gfo00061  Fatty acid biosynthesis
gfo00071  Fatty acid degradation
gfo00190  Oxidative phosphorylation
gfo00220  Arginine biosynthesis
gfo00250  Alanine, aspartate and glutamate metabolism
gfo00280  Valine, leucine and isoleucine degradation
gfo00350  Tyrosine metabolism
gfo00470  D-Amino acid metabolism
gfo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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