KEGG   PATHWAY: gpo00020
Entry
gpo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gordonia polyisoprenivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gpo00020  Citrate cycle (TCA cycle)
gpo00020

Module
gpo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gpo00020]
gpo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gpo00020]
gpo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gpo00020]
gpo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gpo00020]
gpo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gpo00020]
Other DBs
GO: 0006099
Organism
Gordonia polyisoprenivorans [GN:gpo]
Gene
GPOL_c39230  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
GPOL_c04680  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GPOL_c04690  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
GPOL_c39340  citA; citrate synthase CitA [KO:K01647] [EC:2.3.3.1]
GPOL_c17040  prpC; 2-methylcitrate synthase PrpC [KO:K01647] [EC:2.3.3.1]
GPOL_c23340  acn; aconitate hydratase Acn [KO:K01681] [EC:4.2.1.3]
GPOL_c24630  icd; isocitrate dehydrogenase [NADP] Icd [KO:K00031] [EC:1.1.1.42]
GPOL_c17750  sucA; 2-oxoglutarate decarboxylase SucA [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GPOL_c09230  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GPOL_c38360  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GPOL_c38370  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
GPOL_c36140  sdhA2; succinate dehydrogenase, flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
GPOL_c16640  sdhA1; succinate dehydrogenase, flavoprotein subunit SdhA [KO:K00239] [EC:1.3.5.1]
GPOL_c36150  sdhB2; succinate dehydrogenase, iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
GPOL_c16630  sdhB1; succinate dehydrogenase, iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
GPOL_c36130  sdhC2; succinate dehydrogenase, cytochrome b subunit SdhC [KO:K00241]
GPOL_c16660  sdhC1; succinate dehydrogenase, cytochrome b subunit SdhC [KO:K00241]
GPOL_c16650  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein SdhD [KO:K00242]
GPOL_c15660  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
GPOL_c15640  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GPOL_174p00680  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
GPOL_c20320  mqo2; malate:quinone oxidoreductase Mqo [KO:K00116] [EC:1.1.5.4]
GPOL_c13860  mqo1; malate:quinone oxidoreductase Mqo [KO:K00116] [EC:1.1.5.4]
GPOL_c17050  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
GPOL_c05710  pckG; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
GPOL_c03000  putative pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
GPOL_c28830  aceE; pyruvate dehydrogenase E1 component AceE [KO:K00163] [EC:1.2.4.1]
GPOL_c28340  dltA; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gpo00010  Glycolysis / Gluconeogenesis
gpo00053  Ascorbate and aldarate metabolism
gpo00061  Fatty acid biosynthesis
gpo00071  Fatty acid degradation
gpo00190  Oxidative phosphorylation
gpo00220  Arginine biosynthesis
gpo00250  Alanine, aspartate and glutamate metabolism
gpo00280  Valine, leucine and isoleucine degradation
gpo00350  Tyrosine metabolism
gpo00470  D-Amino acid metabolism
gpo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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