KEGG   PATHWAY: gpo00630
Entry
gpo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gordonia polyisoprenivorans
Class
Metabolism; Carbohydrate metabolism
Pathway map
gpo00630  Glyoxylate and dicarboxylate metabolism
gpo00630

Module
gpo_M00012  Glyoxylate cycle [PATH:gpo00630]
gpo_M00621  Glycine cleavage system [PATH:gpo00630]
gpo_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:gpo00630]
Other DBs
GO: 0046487 0043648
Organism
Gordonia polyisoprenivorans [GN:gpo]
Gene
GPOL_c09380  aceA; isocitrate lyase AceA [KO:K01637] [EC:4.1.3.1]
GPOL_c41810  putative acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
GPOL_c02530  acsA1; acetyl-coenzyme A synthetase AcsA [KO:K01895] [EC:6.2.1.1]
GPOL_c07410  acsA2; acetyl-coenzyme A synthetase AcsA [KO:K01895] [EC:6.2.1.1]
GPOL_174p00800  glcB; malate synthase GlcB [KO:K01638] [EC:2.3.3.9]
GPOL_174p00680  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
GPOL_c39230  gltA; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
GPOL_c04680  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GPOL_c04690  citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
GPOL_c39340  citA; citrate synthase CitA [KO:K01647] [EC:2.3.3.1]
GPOL_c17040  prpC; 2-methylcitrate synthase PrpC [KO:K01647] [EC:2.3.3.1]
GPOL_c23340  acn; aconitate hydratase Acn [KO:K01681] [EC:4.2.1.3]
GPOL_c18410  thlA1; acetyl-CoA acetyltransferase ThlA [KO:K00626] [EC:2.3.1.9]
GPOL_c42790  putative acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GPOL_c42830  acetyl-CoA acyltransferase [KO:K00626] [EC:2.3.1.9]
GPOL_c43180  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GPOL_c05460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GPOL_c45480  putative enoyl-CoA hydratase [KO:K00626] [EC:2.3.1.9]
GPOL_c05990  fadI; 3-ketoacyl-CoA thiolase FadI [KO:K00626] [EC:2.3.1.9]
GPOL_c40330  thlA4; acetyl-CoA acetyltransferase ThlA [KO:K00626] [EC:2.3.1.9]
GPOL_c14950  fadA1; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
GPOL_c38960  thlA3; acetyl-CoA acetyltransferase ThlA [KO:K00626] [EC:2.3.1.9]
GPOL_c18400  putative methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
GPOL_c17230  putative acetyl-/propionyl-CoA carboxylase alpha chain [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
GPOL_c17300  propionyl-CoA carboxylase beta chain [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
GPOL_c17290  hypothetical protein [KO:K27095]
GPOL_c28880  accD6; propionyl-CoA carboxylase beta chain 6 [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
GPOL_c23510  mutA; methylmalonyl-CoA mutase small subunit MutA [KO:K01847] [EC:5.4.99.2]
GPOL_c23520  mutB; methylmalonyl-CoA mutase large subunit MutB [KO:K01847] [EC:5.4.99.2]
GPOL_c45490  FAD-dependent oxidoreductase [KO:K00104] [EC:1.1.99.14]
GPOL_c37840  FAD-binding oxidoreductase [KO:K00104] [EC:1.1.99.14]
GPOL_c46020  katA; catalase KatA [KO:K03781] [EC:1.11.1.6]
GPOL_c28580  HAD hydrolase, family IA, variant 1 [KO:K01091] [EC:3.1.3.18]
GPOL_c00460  glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GPOL_c28410  glnA1; glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
GPOL_c28480  glnA2; glutamine synthetase 2 [KO:K01915] [EC:6.3.1.2]
GPOL_c38720  glnN; glutamine synthetase, type 3 [KO:K01915] [EC:6.3.1.2]
GPOL_c18010  glyA2; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
GPOL_c15480  glyA1; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
GPOL_174p00780  glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GPOL_c28310  gcvT; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GPOL_c09230  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GPOL_174p00720  glycine cleavage system H protein [KO:K02437]
GPOL_c01140  putative hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
GPOL_c01150  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
GPOL_c28250  glxK; glycerate kinase GlxK [KO:K00865] [EC:2.7.1.165]
GPOL_c17750  sucA; 2-oxoglutarate decarboxylase SucA [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GPOL_c09920  putative formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
GPOL_c09930  molybdopterin oxidoreductase Fe4S4 domain-containing protein [KO:K00123] [EC:1.17.1.9]
GPOL_c09910  putative formate dehydrogenase, beta subunit [KO:K00124]
GPOL_c09700  purU2; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
GPOL_c02710  purU1; formyltetrahydrofolate deformylase PurU [KO:K01433] [EC:3.5.1.10]
GPOL_c17640  fmdA; formamidase FmdA [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gpo00010  Glycolysis / Gluconeogenesis
gpo00020  Citrate cycle (TCA cycle)
gpo00030  Pentose phosphate pathway
gpo00053  Ascorbate and aldarate metabolism
gpo00071  Fatty acid degradation
gpo00230  Purine metabolism
gpo00250  Alanine, aspartate and glutamate metabolism
gpo00260  Glycine, serine and threonine metabolism
gpo00620  Pyruvate metabolism
gpo00710  Carbon fixation by Calvin cycle
gpo00750  Vitamin B6 metabolism
gpo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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