KEGG   PATHWAY: hhv03030
Entry
hhv03030                    Pathway                                
Name
DNA replication - Hyaena hyaena (striped hyena)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
hhv03030  DNA replication
hhv03030

Organism
Hyaena hyaena (striped hyena) [GN:hhv]
Gene
120219902  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
120220262  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
120220392  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
120224519  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
120224970  RPA4; replication protein A 30 kDa subunit [KO:K10741]
120225462  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
120225537  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
120226610  PCNA; proliferating cell nuclear antigen [KO:K04802]
120228542  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
120229632  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
120230392  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
120230745  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
120231351  RPA2; replication protein A 32 kDa subunit [KO:K10739]
120231747  [KO:K02684] [EC:2.7.7.102]
120232473  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X1 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
120232998  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X1 [KO:K03111]
120233916  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
120234304  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
120236809  RFC3; replication factor C subunit 3 [KO:K10756]
120237005  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
120237177  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
120238101  RFC4; replication factor C subunit 4 [KO:K10755]
120238904  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
120239807  PRIM2; DNA primase large subunit [KO:K02685]
120240165  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
120240189  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
120241563  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
120241883  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
120242733  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
120244945  RFC5; replication factor C subunit 5 [KO:K10756]
120245337  [KO:K10743] [EC:3.1.26.4]
120246183  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
120246322  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
120247361  RFC2; replication factor C subunit 2 [KO:K10755]
120248471  RPA3; replication protein A 14 kDa subunit [KO:K10740]
120248766  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
120248903  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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