KEGG   PATHWAY: hif00020
Entry
hif00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haemophilus influenzae F3031 (nontypeable)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hif00020  Citrate cycle (TCA cycle)
hif00020

Module
hif_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hif00020]
hif_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hif00020]
hif_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hif00020]
Other DBs
GO: 0006099
Organism
Haemophilus influenzae F3031 (nontypeable) [GN:hif]
Gene
HIBPF_05790  2-oxoglutarate decarboxylase, thiamin-requiring [KO:K00164] [EC:1.2.4.2]
HIBPF_05800  dihydrolipoyltranssuccinase [KO:K00658] [EC:2.3.1.61]
HIBPF_06070  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HIBPF_10670  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
HIBPF_10680  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
HIBPF_14730  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
HIBPF_14740  fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
HIBPF_14750  fumarate reductase subunit C [KO:K00246]
HIBPF_14760  fumarate reductase subunit D [KO:K00247]
HIBPF_07650  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
HIBPF_10540  malate dehydrogenase, NAD(P)-binding [KO:K00024] [EC:1.1.1.37]
HIBPF_15010  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
HIBPF_06090  pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
HIBPF_06080  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hif00010  Glycolysis / Gluconeogenesis
hif00061  Fatty acid biosynthesis
hif00190  Oxidative phosphorylation
hif00220  Arginine biosynthesis
hif00250  Alanine, aspartate and glutamate metabolism
hif00280  Valine, leucine and isoleucine degradation
hif00350  Tyrosine metabolism
hif00470  D-Amino acid metabolism
hif00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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