KEGG   PATHWAY: hmar00230
Entry
hmar00230                   Pathway                                
Name
Purine metabolism - Hydrogenovibrio marinus
Class
Metabolism; Nucleotide metabolism
Pathway map
hmar00230  Purine metabolism
hmar00230

Module
hmar_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:hmar00230]
hmar_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:hmar00230]
hmar_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:hmar00230]
hmar_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:hmar00230]
hmar_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:hmar00230]
Other DBs
GO: 0006163 0042278
Organism
Hydrogenovibrio marinus [GN:hmar]
Gene
HVMH_0988  nudF; ADP-ribose pyrophosphatase [KO:K01515] [EC:3.6.1.13 3.6.1.-]
HVMH_0493  nudE; ADP compounds hydrolase NudE [KO:K08312] [EC:3.6.1.-]
HVMH_2189  pgm; phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
HVMH_2033  phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
HVMH_0405  prs; ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
HVMH_1584  purF; amidophosphoribosyltransferase [KO:K00764] [EC:2.4.2.14]
HVMH_1947  purD; phosphoribosylamine--glycine ligase [KO:K01945] [EC:6.3.4.13]
HVMH_1056  purN; phosphoribosylglycinamide formyltransferase [KO:K11175] [EC:2.1.2.2]
HVMH_2242  purT; phosphoribosylglycinamide formyltransferase 2 [KO:K08289] [EC:6.3.1.21]
HVMH_0779  purL; phosphoribosylformylglycinamidine synthase [KO:K01952] [EC:6.3.5.3]
HVMH_1057  purM; phosphoribosylformylglycinamidine cyclo-ligase [KO:K01933] [EC:6.3.3.1]
HVMH_0442  purK; N5-carboxyaminoimidazole ribonucleotide synthase [KO:K01589] [EC:6.3.4.18]
HVMH_0441  purE; N5-carboxyaminoimidazole ribonucleotide mutase [KO:K01588] [EC:5.4.99.18]
HVMH_0303  purC; phosphoribosylaminoimidazole-succinocarboxamide synthase [KO:K01923] [EC:6.3.2.6]
HVMH_1147  purB; adenylosuccinate lyase [KO:K01756] [EC:4.3.2.2]
HVMH_1946  purH; bifunctional purine biosynthesis protein PurH [KO:K00602] [EC:2.1.2.3 3.5.4.10]
HVMH_0104  hypothetical protein [KO:K00759] [EC:2.4.2.7]
HVMH_1260  surE; 5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6]
HVMH_0492  hydrolase [KO:K20881] [EC:3.1.3.-]
HVMH_1677  UPF0345 protein [KO:K09913] [EC:2.4.2.1 2.4.2.2]
HVMH_0976  laccase domain protein [KO:K05810] [EC:2.4.2.1 2.4.2.28 3.5.4.4]
HVMH_1833  guaB; inosine-5'-monophosphate dehydrogenase [KO:K00088] [EC:1.1.1.205]
HVMH_0758  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
HVMH_2220  non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
HVMH_0208  non-canonical purine NTP pyrophosphatase [KO:K01519] [EC:3.6.1.66]
HVMH_1832  guaA; GMP synthase [glutamine-hydrolyzing] [KO:K01951] [EC:6.3.5.2]
HVMH_0994  tRNA-specific adenosine deaminase [KO:K01487] [EC:3.5.4.3]
HVMH_2250  gmk; guanylate kinase [KO:K00942] [EC:2.7.4.8]
HVMH_1922  ribonucleoside-diphosphate reductase [KO:K00525] [EC:1.17.4.1]
HVMH_0485  nrdB; ribonucleotide-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1]
HVMH_1096  deoxyguanosinetriphosphate triphosphohydrolase-like protein [KO:K01129] [EC:3.1.5.1]
HVMH_2256  bifunctional GTP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase [KO:K01139] [EC:2.7.6.5 3.1.7.2]
HVMH_2012  ppx; exopolyphosphatase [KO:K01524] [EC:3.6.1.11 3.6.1.40]
HVMH_1221  relA; GTP pyrophosphokinase [KO:K00951] [EC:2.7.6.5]
HVMH_0161  guanylate cyclase [KO:K01768] [EC:4.6.1.1]
HVMH_1307  CYTH domain-containing protein [KO:K01768] [EC:4.6.1.1]
HVMH_1110  purA; adenylosuccinate synthetase [KO:K01939] [EC:6.3.4.4]
HVMH_2005  LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-]
HVMH_2237  adk; adenylate kinase [KO:K00939] [EC:2.7.4.3]
HVMH_0684  apaH; bis(5'-nucleosyl)-tetraphosphatase, symmetrical [KO:K01525] [EC:3.6.1.41]
HVMH_0816  cysN; sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
HVMH_0815  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Compound
C00002  ATP
C00008  ADP
C00011  CO2
C00014  Ammonia
C00020  AMP
C00035  GDP
C00037  Glycine
C00039  DNA
C00044  GTP
C00046  RNA
C00048  Glyoxylate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00064  L-Glutamine
C00081  ITP
C00086  Urea
C00104  IDP
C00117  D-Ribose 5-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00130  IMP
C00131  dATP
C00144  GMP
C00147  Adenine
C00169  Carbamoyl phosphate
C00206  dADP
C00209  Oxalate
C00212  Adenosine
C00224  Adenylyl sulfate
C00242  Guanine
C00262  Hypoxanthine
C00286  dGTP
C00288  HCO3-
C00294  Inosine
C00301  ADP-ribose
C00330  Deoxyguanosine
C00360  dAMP
C00361  dGDP
C00362  dGMP
C00366  Urate
C00385  Xanthine
C00387  Guanosine
C00499  Allantoate
C00559  Deoxyadenosine
C00575  3',5'-Cyclic AMP
C00603  (S)-Ureidoglycolate
C00620  alpha-D-Ribose 1-phosphate
C00655  Xanthosine 5'-phosphate
C00700  XTP
C00802  Oxalureate
C00942  3',5'-Cyclic GMP
C01228  Guanosine 3',5'-bis(diphosphate)
C01260  P1,P4-Bis(5'-adenosyl)tetraphosphate
C01261  P1,P4-Bis(5'-guanosyl) tetraphosphate
C01344  dIDP
C01345  dITP
C01367  3'-AMP
C01444  Oxamate
C01762  Xanthosine
C02091  (S)-Ureidoglycine
C02348  (R)(-)-Allantoin
C02350  (S)-Allantoin
C02353  2',3'-Cyclic AMP
C02718  N-Formiminoglycine
C03090  5-Phosphoribosylamine
C03373  Aminoimidazole ribotide
C03483  Adenosine tetraphosphate
C03614  Inosine 5'-tetraphosphate
C03794  N6-(1,2-Dicarboxyethyl)-AMP
C03838  5'-Phosphoribosylglycinamide
C04051  5-Amino-4-imidazolecarboxyamide
C04376  5'-Phosphoribosyl-N-formylglycinamide
C04392  P1,P4-Bis(5'-xanthosyl) tetraphosphate
C04494  Guanosine 3'-diphosphate 5'-triphosphate
C04640  2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
C04677  1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
C04734  1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
C04751  1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
C04823  1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
C05239  5-Aminoimidazole
C05512  Deoxyinosine
C05513  Urate-3-ribonucleoside
C05515  5-Ureido-4-imidazole carboxylate
C05516  5-Amino-4-imidazole carboxylate
C05993  Acetyl adenylate
C06193  Guanosine 3'-phosphate
C06194  2',3'-Cyclic GMP
C06195  Imidazolone
C06196  2'-Deoxyinosine 5'-phosphate
C06197  P1,P3-Bis(5'-adenosyl) triphosphate
C06433  5'-Benzoylphosphoadenosine
C06435  5'-Butyrylphosphoinosine
C11821  5-Hydroxyisourate
C12248  5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate
C15667  5-Carboxyamino-1-(5-phospho-D-ribosyl)imidazole
C22395  N6-Succino-2-amino-2'-deoxyadenylate
C22441  dZMP
C22442  dZDP
C22443  dZTP
C22499  8-Hydroxyadenine
C22500  2,8-Dihydroxyadenine
Reference
PMID:10601204
  Authors
Cusa E, Obradors N, Baldoma L, Badia J, Aguilar J.
  Title
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coli.
  Journal
J Bacteriol 181:7479-84 (1999)
DOI:10.1128/JB.181.24.7479-7484.1999
Reference
PMID:10986234
  Authors
Xi H, Schneider BL, Reitzer L.
  Title
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.
  Journal
J Bacteriol 182:5332-41 (2000)
DOI:10.1128/JB.182.19.5332-5341.2000
Related
pathway
hmar00030  Pentose phosphate pathway
hmar00220  Arginine biosynthesis
hmar00250  Alanine, aspartate and glutamate metabolism
hmar00260  Glycine, serine and threonine metabolism
hmar00340  Histidine metabolism
hmar00630  Glyoxylate and dicarboxylate metabolism
hmar00730  Thiamine metabolism
hmar00740  Riboflavin metabolism
hmar00790  Folate biosynthesis
KO pathway
ko00230   
LinkDB

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