KEGG   PATHWAY: hpaz00020
Entry
hpaz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Glaesserella parasuis ZJ0906
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpaz00020  Citrate cycle (TCA cycle)
hpaz00020

Module
hpaz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hpaz00020]
hpaz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hpaz00020]
hpaz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpaz00020]
hpaz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hpaz00020]
hpaz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpaz00020]
Other DBs
GO: 0006099
Organism
Glaesserella parasuis ZJ0906 [GN:hpaz]
Gene
K756_07290  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
K756_07295  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K756_07300  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
K756_05840  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K756_05845  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2) [KO:K00658] [EC:2.3.1.61]
K756_03440  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
K756_05855  succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
K756_05850  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
K756_07135  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
K756_07130  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
K756_07125  fumarate reductase (anaerobic), membrane anchor subunit C [KO:K00246]
K756_07120  fumarate reductase subunit D [KO:K00247]
K756_10950  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K756_02245  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K756_03105  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
K756_03430  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
K756_03435  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpaz00010  Glycolysis / Gluconeogenesis
hpaz00061  Fatty acid biosynthesis
hpaz00071  Fatty acid degradation
hpaz00190  Oxidative phosphorylation
hpaz00220  Arginine biosynthesis
hpaz00250  Alanine, aspartate and glutamate metabolism
hpaz00280  Valine, leucine and isoleucine degradation
hpaz00350  Tyrosine metabolism
hpaz00470  D-Amino acid metabolism
hpaz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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