KEGG   Homo sapiens (human): 84759
Entry
84759             CDS       T01001                                 
Symbol
PCGF1, 2010002K04Rik, NSPC1, RNF3A-2, RNF68
Name
(RefSeq) polycomb group ring finger 1
  KO
K11487  polycomb group RING finger protein 1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
hsa04550  Signaling pathways regulating pluripotency of stem cells
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    84759 (PCGF1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    84759 (PCGF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    84759 (PCGF1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     84759 (PCGF1)
SSDB
Motif
Pfam: RAWUL zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-rbx1 zf-C3HC4_3 zf-RING_UBOX Rad60-SLD zf-RING_5 zf-Nse ATG8 Cobl zf-ANAPC11 TRAF3_RING zf-C3HC4_4 zf-RING_10
Other DBs
NCBI-GeneID: 84759
NCBI-ProteinID: NP_116062
OMIM: 610231
HGNC: 17615
Ensembl: ENSG00000115289
UniProt: Q9BSM1
Structure
LinkDB
Position
2:complement(74505043..74507695)
AA seq 259 aa
MASPQGGQIAIAMRLRNQLQSVYKMDPLRNEEEVRVKIKDLNEHIVCCLCAGYFVDATTI
TECLHTFCKSCIVKYLQTSKYCPMCNIKIHETQPLLNLKLDRVMQDIVYKLVPGLQDSEE
KRIREFYQSRGLDRVTQPTGEEPALSNLGLPFSSFDHSKAHYYRYDEQLNLCLERLSSGK
DKNKSVLQNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSR
WFGKPSPLLLQYSVKEKRR
NT seq 780 nt   +upstreamnt  +downstreamnt
atggcgtctcctcaggggggccagattgcgatcgcgatgaggcttcggaaccagctccag
tcagtgtacaagatggacccgctacggaacgaggaggaggttcgagtgaagatcaaagac
ttgaatgaacacattgtttgctgcctatgcgccggctacttcgtggatgccaccaccatc
acagagtgtcttcatactttctgcaagagttgtattgtgaagtacctccaaactagcaag
tactgccccatgtgcaacattaagatccacgagacacagccactgctcaacctcaaactg
gaccgggtcatgcaggacatcgtgtataagctggtgcctggcttgcaagacagtgaagag
aaacggattcgggaattctaccagtcccgaggtttggaccgggtcacccagcccactggg
gaagagccagcactgagcaacctcggcctccccttcagcagctttgaccactctaaagcc
cactactatcgctatgatgagcagttgaacctgtgcctggagcggctgagttctggcaaa
gacaagaataaaagcgtcctgcagaacaagtatgtccgatgttctgttagagctgaggta
cgccatctccggagggtcctgtgtcaccgcttgatgctaaaccctcagcatgtgcagctc
ctttttgacaatgaagttctccctgatcacatgacaatgaagcagatatggctctcccgc
tggttcggcaagccatcccctttgcttttacaatacagtgtgaaagagaagaggaggtag

KEGG   Homo sapiens (human): 6015
Entry
6015              CDS       T01001                                 
Symbol
RING1, RING1A, RNF1
Name
(RefSeq) ring finger protein 1
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01577  Gene silencing by methylation of H3K27 and ubiquitination of H2AK119
N01585  Deubiquitination of H2AK119
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
N01614  Activation of PRC2.2 by ubiquitination of H2AK119 in germline genes
N01620  Blocking ubiquitination of H2AK119 by CK2
N01701  Transcriptional activation by acetylation of H3K27
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    6015 (RING1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hsa04121]
    6015 (RING1)
   03036 Chromosome and associated proteins [BR:hsa03036]
    6015 (RING1)
Enzymes [BR:hsa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     6015 (RING1)
Ubiquitin system [BR:hsa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    6015 (RING1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     6015 (RING1)
    Noncanonical PRC1 (PRC1.1)
     6015 (RING1)
    Noncanonical PRC1 (PRC1.3/1.5)
     6015 (RING1)
    Noncanonical PRC1 (PRC1.6)
     6015 (RING1)
SSDB
Motif
Pfam: RAWUL zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX zf-Nse zf-C3HC4_4 zf-RING_6 zf-RING_4 zf-RING_5 RING_XB3-XBAT31 zf-rbx1 zf-UDP TRAF3_RING zf-C3HC4_5 Sina_RING zf-ANAPC11
Other DBs
NCBI-GeneID: 6015
NCBI-ProteinID: NP_002922
OMIM: 602045
HGNC: 10018
Ensembl: ENSG00000204227
UniProt: Q06587 A0A1U9X8F2
LinkDB
Position
6:33208500..33212716
AA seq 406 aa
MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT
TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAH
QDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGE
GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG
GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA
LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQ
YTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgacgacgccggcgaatgcccagaatgccagcaaaacgtgggaactgagtctgtatgag
ctgcaccggaccccgcaggaagccataatggatggcacagagattgctgtttcccctcgg
tcactgcattcagaactcatgtgccctatctgcctggacatgctgaagaatacgatgacc
accaaggagtgcctccacagattctgctctgactgcattgtcacagccctacggagcggg
aacaaggagtgtcctacctgccgaaagaagctggtgtccaagcgatccctacggccagac
cccaactttgatgccctgatctctaagatctatcctagccgggaggaatacgaggcccat
caagaccgagtgcttatccgcctgagccgcctgcacaaccagcaggcattgagctccagc
attgaggaggggctacgcatgcaggccatgcacagggcccagcgtgtgaggcggccgata
ccagggtcagatcagaccacaacgatgagtgggggggaaggagagcccggggagggagaa
ggggatggagaagatgtgagctcagactccgcccctgactctgccccaggccctgctccc
aagcgaccccgtggagggggcgcaggggggagcagtgtagggacagggggaggcggcact
ggtggggtgggtgggggtgccggttcggaagactctggtgaccggggagggactctggga
gggggaacgctgggccccccaagccctcctggggcccccagccccccagagccaggtgga
gaaattgagctcgtgttccggccccaccccctgctcgtggagaagggagaatactgccag
acgaggtatgtgaagacaactgggaatgccacagtggaccacctctccaagtacttggcc
ctgcgcattgccctcgagcggaggcaacagcaggaagcaggggagccaggagggcctgga
gggggcgcctctgacaccggaggacctgatgggtgtggcggggagggtgggggtgccgga
ggaggtgacggtcctgaggagcctgctttgcccagcctggagggcgtcagtgaaaagcag
tacaccatctacatcgcacctggaggcggggcgttcacgacgttgaatggctcgctgacc
ctggagctggtgaatgagaaattctggaaggtgtcccggccactggagctgtgctatgct
cccaccaaggatccaaagtga

KEGG   Homo sapiens (human): 6045
Entry
6045              CDS       T01001                                 
Symbol
RNF2, BAP-1, BAP1, DING, HIPI3, LUSYAM, RING1B, RING2
Name
(RefSeq) ring finger protein 2
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01577  Gene silencing by methylation of H3K27 and ubiquitination of H2AK119
N01585  Deubiquitination of H2AK119
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
N01614  Activation of PRC2.2 by ubiquitination of H2AK119 in germline genes
N01620  Blocking ubiquitination of H2AK119 by CK2
N01701  Transcriptional activation by acetylation of H3K27
Disease
H02587  Luo-Schoch-Yamamoto syndrome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    6045 (RNF2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hsa04121]
    6045 (RNF2)
   03036 Chromosome and associated proteins [BR:hsa03036]
    6045 (RNF2)
Enzymes [BR:hsa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     6045 (RNF2)
Ubiquitin system [BR:hsa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    6045 (RNF2)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     6045 (RNF2)
    Noncanonical PRC1 (PRC1.1)
     6045 (RNF2)
    Noncanonical PRC1 (PRC1.3/1.5)
     6045 (RNF2)
    Noncanonical PRC1 (PRC1.6)
     6045 (RNF2)
SSDB
Motif
Pfam: RAWUL zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-C3HC4_3 zf-RING_UBOX zf-C3HC4_4 RING_XB3-XBAT31 zf-Nse zf-RING_5 zf-RING_4 zf-RING_6 zf-rbx1 zf-UDP TRAF3_RING zf-C3HC4_5 zf-ANAPC11
Other DBs
NCBI-GeneID: 6045
NCBI-ProteinID: NP_009143
OMIM: 608985
HGNC: 10061
Ensembl: ENSG00000121481
UniProt: Q99496
Structure
LinkDB
Position
1:185045558..185102603
AA seq 336 aa
MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKN
TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEY
EAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQIENGSGAEDNGDSSHCS
NASTHSNQEAGPSNKRTKTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKD
DSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASG
QFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK
NT seq 1011 nt   +upstreamnt  +downstreamnt
atgtctcaggctgtgcagacaaacggaactcaaccattaagcaaaacatgggaactcagt
ttatatgagttacaacgaacacctcaggaggcaataacagatggcttagaaattgtggtt
tcacctcgaagtctacacagtgaattaatgtgcccaatttgtttggatatgttgaagaac
accatgactacaaaggagtgtttacatcgtttttgtgcagactgcatcatcacagccctt
agaagtggcaacaaagaatgtcctacctgtcggaaaaaactagtttccaaaagatcacta
aggccagacccaaactttgatgcactcatcagcaaaatttatccaagtcgtgatgagtat
gaagctcatcaagagagagtattagccaggatcaacaagcacaataatcagcaagcactc
agtcacagcattgaggaaggactgaagatacaggccatgaacagactgcagcgaggcaag
aaacaacagattgaaaatggtagtggagcagaagataatggtgacagttcacactgcagt
aatgcatccacacatagcaatcaggaagcaggccctagtaacaaacggaccaaaacatct
gatgattctgggctagagcttgataataacaatgcagcaatggcaattgatccagtaatg
gatggtgctagtgaaattgaattagtattcaggcctcatcccacacttatggaaaaagat
gacagtgcacagacgagatacataaagacttctggtaacgccactgttgatcacttatcc
aagtatctggctgtgaggttagctttagaagaacttcgaagcaaaggtgaatcaaaccag
atgaaccttgatacagccagtgagaagcagtataccatttatatagcaacagccagtggc
cagttcactgtattaaatggctctttttctttggaattggtcagtgagaaatactggaaa
gtgaacaaacccatggaactttattacgcacctacaaaggagcacaaatga

KEGG   Homo sapiens (human): 23429
Entry
23429             CDS       T01001                                 
Symbol
RYBP, AAP1, APAP-1, DEDAF, YEAF1
Name
(RefSeq) RING1 and YY1 binding protein
  KO
K11469  RING1 and YY1-binding protein
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
N01614  Activation of PRC2.2 by ubiquitination of H2AK119 in germline genes
N01620  Blocking ubiquitination of H2AK119 by CK2
N01701  Transcriptional activation by acetylation of H3K27
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    23429 (RYBP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    23429 (RYBP)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     23429 (RYBP)
    Noncanonical PRC1 (PRC1.3/1.5)
     23429 (RYBP)
    Noncanonical PRC1 (PRC1.6)
     23429 (RYBP)
SSDB
Motif
Pfam: YAF2_RYBP Zn_ribbon_RanBP
Other DBs
NCBI-GeneID: 23429
NCBI-ProteinID: NP_036366
OMIM: 607535
HGNC: 10480
Ensembl: ENSG00000163602
UniProt: Q8N488
Structure
LinkDB
Position
3:complement(72374597..>72446623)
AA seq 228 aa
MTMGDKKSPTRPKRQAKPAADEGFWDCSVCTFRNSAEAFKCSICDVRKGTSTRKPRINSQ
LVAQQVAQQYATPPPPKKEKKEKVEKQDKEKPEKDKEISPSVTKKNTNKKTKPKSDILKD
PPSEANSIQSANATTKTSETNHTSRPRLKNVDRSTAQQLAVTVGNVTVIITDFKEKTRSS
STSSSTVTSSAGSEQQNQSSSGSESTDKGSSRSSTPKGDMSAVNDESF
NT seq 687 nt   +upstreamnt  +downstreamnt
atgaccatgggcgacaagaagagcccgaccaggccaaaaagacaagcgaaacctgccgca
gacgaagggttttgggattgtagcgtctgcaccttcagaaacagtgctgaagcctttaaa
tgcagcatctgcgatgtgaggaaaggcacctccaccagaaaacctcggatcaattctcag
ctggtggcacaacaagtggcacaacagtatgccaccccaccaccccctaaaaaggagaag
aaggagaaagttgaaaagcaggacaaagagaaacctgagaaagacaaggaaattagtcct
agtgttaccaagaaaaataccaacaagaaaaccaaaccaaagtctgacattctgaaagat
cctcctagtgaagcaaacagcatacagtctgcaaatgctacaacaaagaccagcgaaaca
aatcacacctcaaggccccggctgaaaaacgtggacaggagcactgcacagcagttggca
gtaactgtgggcaacgtcaccgtcattatcacagactttaaggaaaagactcgctcctca
tcgacatcctcatccacagtgacctccagtgcagggtcagaacagcagaaccagagcagc
tcggggtcagagagcacagacaagggctcctcccgttcctccacgccaaagggcgacatg
tcagcagtcaatgatgaatctttctga

KEGG   Homo sapiens (human): 10138
Entry
10138             CDS       T01001                                 
Symbol
YAF2
Name
(RefSeq) YY1 associated factor 2
  KO
K11468  YY1-associated factor 2
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
N01614  Activation of PRC2.2 by ubiquitination of H2AK119 in germline genes
N01620  Blocking ubiquitination of H2AK119 by CK2
N01701  Transcriptional activation by acetylation of H3K27
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    10138 (YAF2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    10138 (YAF2)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     10138 (YAF2)
    Noncanonical PRC1 (PRC1.3/1.5)
     10138 (YAF2)
    Noncanonical PRC1 (PRC1.6)
     10138 (YAF2)
SSDB
Motif
Pfam: YAF2_RYBP Zn_ribbon_RanBP PROCN
Other DBs
NCBI-GeneID: 10138
NCBI-ProteinID: NP_005739
OMIM: 607534
HGNC: 17363
Ensembl: ENSG00000015153
UniProt: Q8IY57
Structure
LinkDB
Position
12:complement(42157104..42238248)
AA seq 180 aa
MGDKKSPTRPKRQPKPSSDEGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKPRPVSQLV
AQQVTQQFVPPTQSKKEKKDKVEKEKSEKETTSKKNSHKKTRPRLKNVDRSSAQHLEVTV
GDLTVIITDFKEKTKSPPASSAASADQHSQSGSSSDNTERGMSRSSSPRGEASSLNGESH
NT seq 543 nt   +upstreamnt  +downstreamnt
atgggagacaagaagagccccaccaggccgaagcggcagccgaagccgtcctcggatgag
ggttactgggactgtagcgtctgcaccttccggaacagcgccgaggccttcaagtgcatg
atgtgcgatgtgcggaagggcacctccacccggaaacctcgacctgtctcccagttggtt
gcacagcaggttactcagcagtttgtgcctcctacacagtcaaagaaagagaaaaaagat
aaagtagaaaaagaaaaaagtgaaaaggaaacaactagcaaaaagaatagccataagaaa
accaggccaagattgaaaaatgtggatcggagtagtgctcagcatttggaagttactgtt
ggagatctgacagtcattattacagactttaaggagaaaacaaagtcaccgcctgcatct
agtgctgcttctgcagatcaacacagtcaaagcggctctagctctgataacacagagaga
ggaatgtccaggtcatcttcacccagaggagaagcctcatcattgaatggagaatctcat
taa

KEGG   Homo sapiens (human): 84678
Entry
84678             CDS       T01001                                 
Symbol
KDM2B, CXXC2, FBXL10, Fbl10, JHDM1B, PCCX2
Name
(RefSeq) lysine demethylase 2B
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    84678 (KDM2B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hsa03000]
    84678 (KDM2B)
   04121 Ubiquitin system [BR:hsa04121]
    84678 (KDM2B)
   03036 Chromosome and associated proteins [BR:hsa03036]
    84678 (KDM2B)
Enzymes [BR:hsa01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     84678 (KDM2B)
Transcription factors [BR:hsa03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    84678 (KDM2B)
Ubiquitin system [BR:hsa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     84678 (KDM2B)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    84678 (KDM2B)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     84678 (KDM2B)
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box DUF7885 Cupin_8 JmjC AppA_SCHIC
Other DBs
NCBI-GeneID: 84678
NCBI-ProteinID: NP_115979
OMIM: 609078
HGNC: 13610
Ensembl: ENSG00000089094
UniProt: Q8NHM5
Structure
LinkDB
Position
12:complement(121408461..121582279)
AA seq 1336 aa
MAGPQMGGSAEDHPPRKRHAAEKQKKKTVIYTKCFEFESATQRPIDRQRYDENEDLSDVE
EIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLIFREKDGLGIKMPD
PDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFVRYYETPEAQRDKLYNVISLEFSH
TKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNAIAEMKYPKVKKYCLMSVKGCFTD
FHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIEL
KQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYY
EMCWYVLERYVYCVTQRSHLTQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEEACDQQPQ
EEEEKDEEGEGRDRAPKPPTDGSTSPTSTPSEDQEALGKKPKAPALRFLKRTLSNESEES
VKSTTLAVDYPKTPTGSPATEVSAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIED
PQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTPKNRAVGRPKGKLGPASAVKLAAN
RTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTA
VCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECP
KCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDE
HSKKVPPDGLLRRKSDDVHLRKKRKYEKPQELSGRKRASSLQTSPGSSSHLSPRPPLGSS
LSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRMALANKPLRRFKQEPEDELPEA
PPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRKRRLPNKELSRELSKELNHEIQR
TENSLANENQQPIKSEPESEGEEPKRPPGICERPHRFSKGLNGTPRELRHQLGPSLRSPP
RVISRPPPSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQ
DLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLSWTNISKKQ
LSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTD
NRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLT
AVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSV
SVQFGQVEEKLLQKLS
NT seq 4011 nt   +upstreamnt  +downstreamnt
atggcgggtccgcaaatggggggatctgcagaggatcaccccccacgaaaaagacatgca
gcagaaaagcaaaaaaagaaaacagttatatatacaaaatgctttgaatttgagtcggcc
acacagcgcccgattgaccgccagcgatacgacgagaacgaggacttgtcggacgtggag
gagatcgtcagcgtccgcggcttcagcctggaggagaagcttcgcagccagctgtaccag
ggggacttcgtgcacgccatggagggcaaagatttcaactatgagtacgtacagagagaa
gctctcagggttcccctgatatttcgagaaaaggatggactgggaattaagatgcctgac
cctgatttcacagtccgagacgtcaaactcctagtggggagccggcggcttgtggacgtg
atggatgtgaacacccagaagggcacggagatgagcatgtcccagtttgtgcgttactac
gagacgcccgaggcccagcgggacaagctgtacaacgtcatcagcctagagttcagccac
accaagctggagcacttggtcaagcgtccgactgtggtagacctggtggactgggtggac
aacatgtggccccagcatctgaaggagaagcagacagaagccacgaacgccattgcagag
atgaagtacccgaaagtgaaaaagtactgtctgatgagcgtgaaaggttgtttcaccgac
ttccacatcgactttggaggcacttccgtttggtaccatgttttccggggtgggaagatt
ttttggctgattcctccaacgctgcacaatttggcgctgtacgaggagtgggtgctgtca
ggcaaacagagtgacatctttctgggagaccgtgtggaacgatgccaaagaattgagctg
aagcagggctacacatttttcatcccttccggttggatccatgccgtctacacccctgta
gactctttggtgttcggcggaaacatcctgcacagctttaacgtgcccatgcagctgcgg
atctacgagatcgaggacaggacgcgggtgcagcccaaattccgttaccccttctactat
gagatgtgctggtatgtcctggagagatacgtgtactgtgtgacccagcgctcccacctc
actcaggaataccagagggagtcgatgcttattgatgccccgaggaagcccagcatagac
ggcttctcttcggattcctggctggagatggaggaggaggcctgtgatcagcagcctcag
gaggaggaggagaaggacgaggagggcgagggcagggacagggcacccaaaccgcccacc
gatggctccacttcacccaccagcacgccctctgaggaccaggaggccctcgggaagaag
cccaaagcacctgccctgcgattcctcaaaaggactttgtctaatgagtcggaggaaagt
gtgaagtccaccacattggccgtagactaccccaagacccccaccggctctcccgccacg
gaggtctctgccaaatggacccatctcactgagtttgaactgaagggcctgaaagctctg
gtggagaaactggaatccctcccggagaacaagaagtgtgtccccgagggcatcgaggac
ccccaggcactcctggagggtgtgaagaacgtcctgaaggagcacgcagatgatgaccct
agtctggccatcactggggtccctgtggtgacttggccaaagaagactccaaagaaccgg
gctgtgggtcggcccaaggggaagctgggcccggcctccgcggtgaagttggccgccaac
cggacaacggcaggagctcggcggcgccggacgcgatgccgcaagtgcgaggcctgcctg
cggaccgagtgcggagagtgccacttctgcaaggacatgaagaagttcgggggccccggg
cgcatgaagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccccacaccgcc
gtgtgccttgtgtgtggcgaggcggggaaggaagacacggtggaagaggaggaaggcaag
tttaacctcatgctcatggagtgctccatctgcaatgaaatcatccaccctggatgcctt
aagattaaggagtcagagggtgtggtcaacgacgagcttccaaactgctgggagtgtccg
aagtgtaaccacgccggcaagaccgggaaacaaaagcgtggccctggctttaagtacgcc
tccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaacaaggaaggg
caggaacctgccaagcggaggagtgagtgtgaggaggcgccccggcgcaggtcggatgag
cactcgaagaaggtgccgccggacggccttctgcgcagaaagtctgacgacgtgcacctg
aggaagaagcggaaatacgagaagccccaggagctgagtggacgcaagcgggcctcatcg
cttcaaacgtcccccggttcctcctctcacctctcgccgaggccccctctaggcagcagc
ctcagcccctggtggagatccagtctcacttacttccagcagcagctcaaacctggcaaa
gaagataagcttttcaggaaaaagcggcggtcctggaagaacgccgaggaccgcatggcg
ctggccaacaagcccctccggcgcttcaagcaggaacccgaggacgaactgcccgaggcg
ccccccaagaccagggagagcgaccactcccgctccagctcccccaccgcgggacccagc
accgaaggggccgagggcccggaggagaagaagaaggtgaagatgcgccggaagcggcgg
cttcccaacaaggagctgagcagggagctgagcaaggagctcaaccacgagatccagagg
acggagaacagcctggccaacgagaaccagcagcccatcaagtcggagcctgagagcgag
ggcgaggagcccaagcggcccccgggcatctgcgagcgtccccaccgcttcagcaagggg
ctcaacggcaccccccgggagctgcggcaccagctggggcccagcctgcgcagcccgccc
cgtgtcatctcccggcccccaccctccgtgtccccgcccaagtgtatccagatggagcgc
catgtgatccggccaccccccatcagccccccgcctgactcgctacccctggacgatggg
gcagcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctcagccaccaa
gacctgtgtgtgtgcatgcgggtctgcaggacctggaaccgctggtgctgcgataagcgg
ttgtggacccgcattgacctgaaccactgcaagtctatcacacccctgatgctgagtggc
atcatccggcgacagcccgtctccctcgacctcagctggaccaatatctccaagaagcag
ctgagctggctcatcaaccggctgcctgggctccgggacttggtgctgtcaggctgctca
tggatcgcggtctcggccctttgcagctccagttgtccgctgctccggaccctggatgtc
cagtgggtggagggactaaaggatgcccagatgcgggatctcctgtccccgcccacagac
aacaggccaggtcagatggacaatcggagcaagctccggaacatcgtggagctgcgcctg
gcaggcctggacatcacagatgcctccctgcggctcatcatccgccacatgcccctgctc
tccaagctccacctcagttactgtaaccacgtcaccgaccagtctatcaacctgctcact
gctgttggcaccaccacccgagactccttaaccgagatcaacctgtctgactgcaataag
gtcactgatcagtgcctgtccttcttcaaacgctgtggaaacatctgtcatattgacctg
aggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgagatgtctgtg
agtgtccagtttgggcaagtagaagaaaaactcctgcaaaaactgagttag

KEGG   Homo sapiens (human): 54880
Entry
54880             CDS       T01001                                 
Symbol
BCOR, ANOP2, MAA2, MCOPS2
Name
(RefSeq) BCL6 corepressor
  KO
K23215  bcl-6 corepressor
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
Disease
H02170  Microphthalmia, syndromic
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    54880 (BCOR)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    54880 (BCOR)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     54880 (BCOR)
SSDB
Motif
Pfam: BCOR PUFD Ank_2 Ank Ank_3 Ank_5 Ank_4 Ank_KRIT1 ANK_LRRK2
Other DBs
NCBI-GeneID: 54880
NCBI-ProteinID: NP_001116857
OMIM: 300485
HGNC: 20893
Ensembl: ENSG00000183337
UniProt: Q6W2J9
Structure
LinkDB
Position
X:complement(40051246..40177277)
AA seq 1755 aa
MLSATPLYGNVHSWMNSERVRMCGASEDRKILVNDGDASKARLELREENPLNHNVVDAST
AHRIDGLAALSMDRTGLIREGLRVPGNIVYSSLCGLGSEKGREAATSTLGGLGFSSERNP
EMQFKPNTPETVEASAVSGKPPNGFSAIYKTPPGIQKSAVATAEALGLDRPASDKQSPLN
INGASYLRLPWVNPYMEGATPAIYPFLDSPNKYSLNMYKALLPQQSYSLAQPLYSPVCTN
GERFLYLPPPHYVGPHIPSSLASPMRLSTPSASPAIPPLVHCADKSLPWKMGVSPGNPVD
SHAYPHIQNSKQPRVPSAKAVTSGLPGDTALLLPPSPRPSPRVHLPTQPAADTYSEFHKH
YARISTSPSVALSKPYMTVSSEFPAARLSNGKYPKAPEGGEGAQPVPGHARKTAVQDRKD
GSSPPLLEKQTVTKDVTDKPLDLSSKVVDVDASKADHMKKMAPTVLVHSRAGSGLVLSGS
EIPKETLSPPGNGCAIYRSEIISTAPSSWVVPGPSPNEENNGKSMSLKNKALDWAIPQQR
SSSCPRMGGTDAVITNVSGSVSSAGRPASASPAPNANADGTKTSRSSVETTPSVIQHVGQ
PPATPAKHSSSTSSKGAKASNPEPSFKANENGLPPSSIFLSPNEAFRSPPIPYPRSYLPY
PAPEGIAVSPLSLHGKGPVYPHPVLLPNGSLFPGHLAPKPGLPYGLPTGRPEFVTYQDAL
GLGMVHPMLIPHTPIEITKEEKPERRSRSHERARYEDPTLRNRFSEILETSSTKLHPDVP
TDKNLKPNPNWNQGKTVVKSDKLVYVDLLREEPDAKTDTNVSKPSFAAESVGQSAEPPKP
SVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLAGTNKENLGLPVSTPF
LEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKDGADEAESNDGKVLKPKPS
KLAKRIANSAGYVGDRFKCVTTELYADSSQLSREQRALQMEGLQEDSILCLPAAYCERAM
MRFSELEMKEREGGHPATKDSEMCKFSPADWERLKGNQDKKPKSVTLEEAIAEQNESERC
EYSVGNKHRDPFEAPEDKDLPVEKYFVERQPVSEPPADQVASDMPHSPTLRVDRKRKVSG
DSSHTETTAEEVPEDPLLKAKRRRVSKDDWPEREMTNSSSNHLEDPHYSELTNLKVCIEL
TGLHPKKQRHLLHLRERWEQQVSAADGKPGRQSRKEVTQATQPEAIPQGTNITEEKPGRK
RAEAKGNRSWSEESLKPSDNEQGLPVFSGSPPMKSLSSTSAGGKKQAQPSCAPASRPPAK
QQKIKENQKTDVLCADEEEDCQAASLLQKYTDNSEKPSGKRLCKTKHLIPQESRRGLPLT
GEYYVENADGKVTVRRFRKRPEPSSDYDLSPAKQEPKPFDRLQQLLPASQSTQLPCSSSP
QETTQSRPMPPEARRLIVNKNAGETLLQRAARLGYEEVVLYCLENKICDVNHRDNAGYCA
LHEACARGWLNIVRHLLEYGADVNCSAQDGTRPLHDAVENDHLEIVRLLLSYGADPTLAT
YSGRTIMKMTHSELMEKFLTDYLNDLQGRNDDDASGTWDFYGSSVCEPDDESGYDVLANP
PGPEDQDDDDDAYSDVFEFEFSETPLLPCYNIQVSVAQGPRNWLLLSDVLKKLKMSSRIF
RCNFPNVEIVTIAEAEFYRQVSASLLFSCSKDLEAFNPESKELLDLVEFTNEIQTLLGSS
VEWLHPSDLASDNYW
NT seq 5268 nt   +upstreamnt  +downstreamnt
atgctctcagcaacccccctgtatgggaacgttcacagctggatgaacagcgagagggtc
cgcatgtgtggggcgagcgaagacaggaaaatccttgtaaatgatggtgacgcttcaaaa
gccagactggaactgagggaagagaatcccttgaaccacaacgtggtggatgcgagcacg
gcccataggatcgatggcctggcagcactgagcatggaccgcactggcctgatccgggaa
gggctgcgggtcccgggaaacatcgtctattctagcttgtgtggactgggctcagagaaa
ggtcgggaggctgccacaagcactctaggtggccttgggttttcttcggaaagaaatcca
gagatgcagttcaaaccgaatacacccgagacagtggaggcttctgccgtctctggaaaa
cccccaaatggcttcagtgctatatacaaaacaccgcctggaatacaaaaaagtgctgta
gccacagcagaagcgctgggcttggacaggcctgccagcgacaaacagagccctctcaac
atcaatggtgctagttatctgcggctgccctgggtcaatccttacatggagggtgccacg
ccagccatctaccctttcctcgactcgccaaataagtattcactgaacatgtacaaggcc
ttgctacctcagcagtcctacagcttggcccagccgctgtattctccagtctgcaccaat
ggggagcgctttctctacctgccgccacctcactacgtcggtccccacatcccatcgtcc
ttggcatcacccatgaggctctcgacaccttcggcctccccagccatcccgcctctcgtc
cattgcgcagacaaaagcctcccgtggaagatgggcgtcagccctgggaatcctgttgat
tcccacgcctatcctcacatccagaacagtaagcagcccagggttccctctgccaaggcg
gtcaccagtggcctgccgggggacacagctctcctgttgcccccctcgcctcggccgtca
ccccgagtccaccttcccacccagcctgctgcagacacctactcggagttccacaagcac
tatgccaggatctccacctctccttcagttgccctgtcaaagccatacatgacagttagc
agcgagttccccgcggccaggctctccaatggcaagtatcccaaggctccggaagggggc
gaaggtgcccagccagtgcccgggcatgcccggaagacagcggttcaagacagaaaagat
ggcagctcacctcctctgttggagaagcagaccgttaccaaagacgtcacagataagcca
ctagacttgtcttctaaagtggtggatgtagatgcttccaaagctgaccacatgaaaaag
atggctcccacggtcctggttcacagcagggctggaagtggcttagtgctctccggaagt
gagattccgaaagaaacactatctcctccaggaaatggttgtgctatctatagatctgaa
atcatcagcactgctccctcatcctgggtggtgcccgggccaagtcctaacgaagagaac
aatggcaaaagcatgtcgctgaaaaacaaggcattggactgggcgataccacagcagcgg
agttcatcatgcccgcgcatgggcggcaccgatgctgtcatcactaacgtttcagggtca
gtgtcgagtgcaggccgcccagcctccgcatcacccgcccccaatgccaatgcagatggc
accaaaaccagcaggagctctgtagaaaccacaccatccgttattcagcacgtgggccag
cccccggccactcctgccaagcacagtagcagcaccagcagcaagggcgccaaagccagc
aacccagaaccgagtttcaaagcaaacgagaacggccttccaccaagctctatatttctg
tctccaaatgaggcattcaggtccccaccaattccctaccccaggagttacctcccttac
ccagcccctgagggcattgctgtaagtcccctctccttacatggcaaaggacctgtctac
cctcacccagttttgttacccaatggcagtctgtttcctgggcaccttgccccaaagcct
gggctgccctatgggcttcccaccggccgtccagagtttgtgacctaccaagatgccctg
gggttgggcatggtgcatcccatgttgataccacacacgcccatagagattactaaagag
gagaaaccagagaggagatcccggtcccatgagagagcccgttacgaggacccaaccctc
cggaatcggttttccgagattttggaaactagcagcaccaagttacatccagatgtcccc
accgacaagaacctaaagccgaaccccaactggaatcaagggaagactgttgtcaaaagc
gacaagcttgtctacgtagaccttctccgagaagaaccagatgctaaaactgacacaaac
gtgtccaaacccagctttgcagcagagagtgttggccagagcgctgagccccccaagccc
tcagttgagccggccctgcagcagcaccgtgatttcatcgccctgagagaggagttgggg
cgcatcagtgacttccacgaaacttatactttcaaacagccagtcttcaccgtaagcaag
gacagtgttctggcaggtaccaacaaagagaacctagggttgccagtctcgactccattc
ctggagccacctctggggagcgatggccctgctgtaacttttggtaaaacccaagaggat
cccaaaccattttgtgtgggcagtgccccaccaagtgtggatgtgacccccacctatacc
aaagatggagctgatgaggctgaatcaaatgatggcaaagttctgaaaccgaagccatct
aagctggcaaagagaatcgccaactcagcgggttacgtgggtgaccgattcaaatgtgtc
actaccgaactgtatgcagattccagtcagctcagccgggagcaacgggcattgcagatg
gaaggattacaagaggacagtattttatgtctacccgctgcttactgtgagcgtgcaatg
atgcgcttctcagagttggagatgaaagaaagagaaggtggccacccagcaaccaaagac
tccgagatgtgcaaattcagcccagccgactgggaaaggttgaaaggaaatcaggacaaa
aagccaaagtcggtcaccctggaggaggccattgcagaacagaacgaaagtgagagatgc
gagtatagtgttggaaacaagcaccgtgatccctttgaagccccagaggacaaagatctt
cctgtggagaagtactttgtggagaggcagcctgtgagcgagcctcccgcagaccaggtg
gcctcggacatgcctcacagccccaccctccgggtggacaggaaacgcaaagtctcaggt
gacagcagccacactgagaccactgcggaggaggtgccagaggaccctctgctgaaagcc
aaacgccgacgagtctctaaagatgactggcctgagagggaaatgacaaacagttcctct
aaccacttagaagacccacattatagtgagctgaccaacctgaaggtgtgcattgaatta
acagggctccatcctaaaaaacaacgccacttgctgcaccttagagaacgatgggagcag
caggtgtcggcagcagatggcaaacctggccggcaaagcaggaaggaagtgacccaggcc
actcagcctgaggccattcctcaggggactaacatcactgaagagaaacctggcaggaaa
agggcagaggccaaaggcaacagaagctggtcggaagagtctcttaaacccagtgacaat
gaacaaggcttgcctgtgttctccggctctccgcccatgaagagtctttcatccaccagt
gcaggcggcaaaaagcaggctcagccaagctgcgcaccagcctccaggccgcctgccaaa
cagcagaaaattaaagaaaaccagaagacagatgtgctgtgtgcagacgaagaagaggat
tgccaggctgcctccctgctgcagaaatacaccgacaacagcgagaagccatccgggaag
agactgtgcaaaaccaaacacttgatccctcaggagtccaggcggggattgccactgaca
ggggaatactacgtggagaatgccgatggcaaggtgactgtccggagattcagaaagcgg
ccggagcccagttcggactatgatctgtcaccagccaagcaggagccaaagcccttcgac
cgcttgcagcaactgctaccagcctcccagtccacacagctgccatgctcaagttcccct
caggagaccacccagtctcgccctatgccgccggaagcacggagacttattgtcaataag
aacgctggcgagacccttctgcagcgggcagccaggcttggctatgaggaagtggtcctg
tactgcttagagaacaagatttgtgatgtaaatcatcgggacaacgcaggttactgcgcc
ctgcatgaagcttgtgctaggggctggctcaacattgtgcgacacctccttgaatatggc
gctgatgtcaactgtagtgcccaggatggaaccaggcctctgcacgatgctgttgagaac
gatcacttggaaattgtccgactacttctctcttatggtgctgaccccaccttggctacg
tactcaggtagaaccatcatgaaaatgacccacagtgaacttatggaaaagttcttaaca
gattatttaaatgacctccagggtcgcaatgatgatgacgccagtggcacttgggacttc
tatggcagctctgtttgtgaaccagatgatgaaagtggctatgatgttttagccaacccc
ccaggaccagaagaccaggatgatgatgacgatgcctatagcgatgtgtttgaatttgaa
ttttcagagacccccctcttaccgtgttataacatccaagtatctgtggctcaggggcca
cgaaactggctactgctttcggatgtccttaagaaattgaaaatgtcctcccgcatattt
cgctgcaattttccaaacgtggaaattgtcaccattgcagaggcagaattttatcggcag
gtttctgcaagtctcttgttctcttgctccaaagacctggaagccttcaaccctgaaagt
aaggagctgttagatctggtggaattcacgaacgaaattcagactctgctgggctcctct
gtagagtggctccaccccagtgatctggcctcagacaactactggtga

KEGG   Homo sapiens (human): 63035
Entry
63035             CDS       T01001                                 
Symbol
BCORL1, BCoR-L1, CXorf10, SHUVER
Name
(RefSeq) BCL6 corepressor like 1
  KO
K26199  BCL-6 corepressor-like protein 1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
Network
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
Disease
H02622  Shukla-Vernon syndrome
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    63035 (BCORL1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:hsa03036]
    63035 (BCORL1)
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:hsa03037]
    63035 (BCORL1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     63035 (BCORL1)
Cilium and associated proteins [BR:hsa03037]
 Motile cilia and associated proteins
  Sperm associated proteins
   63035 (BCORL1)
SSDB
Motif
Pfam: PUFD Ank_2 Ank Ank_4 Ank_3 Ank_5
Other DBs
NCBI-GeneID: 63035
NCBI-ProteinID: NP_001171701
OMIM: 300688
HGNC: 25657
Ensembl: ENSG00000085185
UniProt: Q5H9F3
Structure
LinkDB
Position
X:129980313..130058071
AA seq 1785 aa
MISTAPLYSGVHNWTSSDRIRMCGINEERRAPLSDEESTTGDCQHFGSQEFCVSSSFSKV
ELTAVGSGSNARGADPDGSATEKLGHKSEDKPDDPQPKMDYAGNVAEAEGLLVPLSSPGD
GLKLPASDSAEASNSRADCSWTPLNTQMSKQVDCSPAGVKALDSRQGVGEKNTFILATLG
TGVPVEGTLPLVTTNFSPLPAPICPPAPGSASVPHSVPDAFQVPLSVPAPVPHSGLVPVQ
VATSVPAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAP
APAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVPMPTP
TPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPTPMPAATPAAIPTSAPIPASFSLSRV
CFPAAQAPAMQKVPLSFQPGTVLTPSQPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPV
LPSYLQDRCLPGVLASPELRSYPYAFSVARPLTSDSKLVSLEVNRLPCTSPSGSTTTQPA
PDGVPGPLADTSLVTASAKVLPTPQPLLPAPSGSSAPPHPAKMPSGTEQQTEGTSVTFSP
LKSPPQLEREMASPPECSEMPLDLSSKSNRQKLPLPNQRKTPPMPVLTPVHTSSKALLST
VLSRSQRTTQAAGGNVTSCLGSTSSPFVIFPEIVRNGDPSTWVKNSTALISTIPGTYVGV
ANPVPASLLLNKDPNLGLNRDPRHLPKQEPISIIDQGEPKGTGATCGKKGSQAGAEGQPS
TVKRYTPARIAPGLPGCQTKELSLWKPTGPANIYPRCSVNGKPTSTQVLPVGWSPYHQAS
LLSIGISSAGQLTPSQGAPIRPTSVVSEFSGVPSLSSSEAVHGLPEGQPRPGGSFVPEQD
PVTKNKTCRIAAKPYEEQVNPVLLTLSPQTGTLALSVQPSGGDIRMNQGPEESESHLCSD
STPKMEGPQGACGLKLAGDTKPKNQVLATYMSHELVLATPQNLPKMPELPLLPHDSHPKE
LILDVVPSSRRGSSTERPQLGSQVDLGRVKMEKVDGDVVFNLATCFRADGLPVAPQRGQA
EVRAKAGQARVKQESVGVFACKNKWQPDDVTESLPPKKMKCGKEKDSEEQQLQPQAKAVV
RSSHRPKCRKLPSDPQESTKKSPRGASDSGKEHNGVRGKHKHRKPTKPESQSPGKRADSH
EEGSLEKKAKSSFRDFIPVVLSTRTRSQSGSICSSFAGMADSDMGSQEVFPTEEEEEVTP
TPAKRRKVRKTQRDTQYRSHHAQDKSLLSQGRRHLWRAREMPWRTEAARQMWDTNEEEEE
EEEEGLLKRKKRRRQKSRKYQTGEYLTEQEDEQRRKGRADLKARKQKTSSSQSLEHRLRN
RNLLLPNKVQGISDSPNGFLPNNLEEPACLENSEKPSGKRKCKTKHMATVSEEAKGKGRW
SQQKTRSPKSPTPVKPTEPCTPSKSRSASSEEASESPTARQIPPEARRLIVNKNAGETLL
QRAARLGYKDVVLYCLQKDSEDVNHRDNAGYTALHEACSRGWTDILNILLEHGANVNCSA
QDGTRPVHDAVVNDNLETIWLLLSYGADPTLATYSGQTAMKLASSDTMKRFLSDHLSDLQ
GRAEGDPGVSWDFYSSSVLEEKDGFACDLLHNPPGSSDQEGDDPMEEDDFMFELSDKPLL
PCYNLQVSVSRGPCNWFLFSDVLKRLKLSSRIFQARFPHFEITTMPKAEFYRQVASSQLL
TPAERPGGLDDRSPPGSSETVELVRYEPDLLRLLGSEVEFQSCNS
NT seq 5358 nt   +upstreamnt  +downstreamnt
atgatctctacagcaccgctctacagcggcgtgcacaactggaccagttctgaccggatt
cgcatgtgtggcatcaacgaggagagaagagcacctctttctgatgaggagtcaacgaca
ggcgactgccagcactttggatctcaggagttttgtgtcagcagcagtttttccaaggtg
gagctcacggcagttggaagtggcagcaatgcccggggggcagacccagatggcagtgct
acagaaaaacttgggcacaagtcagaagacaagcctgacgatccccagccaaaaatggac
tacgctgggaacgtggcagaggctgagggcctcttggtgcccctgagcagcccaggagac
gggctcaagcttcccgcatctgacagcgccgaggccagcaacagcagggccgactgctcc
tggactccactcaacacccaaatgagcaaacaggttgactgctcacccgccggagtaaag
gctttggactctcggcaaggtgttggagagaagaatactttcattttggcaactctggga
actggagtccctgtggaggggaccctgcccctggttaccactaacttcagtcctctgcca
gcccctatctgtccccctgctcccggttcggcctctgtgccccactctgttccagatgca
ttccaggttcccctctccgtccctgccccagtcccccattcagggcttgttccagtccaa
gttgccacttcggttccagctccttcccctcccttagcacctgtcccggctctggctcca
gcgccaccgtcagtgcccacgctcatctctgactcgaaccccctttctgtttcggcctca
gtcttggtgcctgtgccagcttctgctcccccttcaggcccggttcccttgtcggctcca
gctcctgccccgctttcagtcccagtttcagctcctcccttggctctcatccaggctcct
gtgcccccttcagctccgaccttggttctcgctcccgtccccactccggttctggctccc
atgccagcatccacgcctccagcggcccctgcccctccgtctgtgcccatgcccactcca
accccatcttccggcccaccttctacccccaccctcatccccgcctttgctcctacaccg
gtgcctgcacccaccccagcccccatctttactccagcccctacacccatgcctgctgcc
acgccagctgccattcccacctctgcacccatcccggcctccttcagtttgagtagagtg
tgctttcctgcagctcaggcaccagctatgcaaaaagtccccctgtcctttcagccaggg
acagtgctgaccccgagccagccgctggtatatatcccgcctccaagctgtgggcagcca
ctcagtgtggccacactgccaaccactctaggggtttcctccactcttacgctccctgtc
ctgccgtcctacctgcaggacaggtgtctcccaggcgtgctagcctcccccgagctccgt
tcttacccgtatgcattttctgtggcccggcctctgacttcggattccaagctggtatct
ctggaggtgaacaggctcccctgcacttccccatccggtagcaccaccacccagcctgca
cccgatggggtccctgggcctttggcagatacctcccttgttactgcttctgccaaggtg
cttccaactccacagcctctgctgccagcccccagtgggagctcagccccaccgcacccc
gccaagatgcccagtggcaccgagcagcaaacagaagggacttccgttaccttctctcct
cttaagtcaccgccacagctggaacgagagatggcctctccacctgagtgcagcgagatg
ccccttgatctgtcctccaagtccaaccgccagaagcttccattgccgaaccagcgcaag
acaccccccatgcctgtgttgacccccgtgcacaccagcagcaaggccctcctctccaca
gtcctgtctaggtctcagcgcacaacccaggctgccggtggcaatgtcacctcctgcctg
ggctccacttcctcgccctttgtcatctttcccgagatcgtgaggaatggggacccgagc
acctgggtgaagaactcaactgcactgatcagcaccattcctggcacctacgtgggagtg
gccaacccagtgcctgcatccctgctgctgaacaaagaccccaacctgggcctcaaccgt
gacccccgccatctccccaagcaggagcccatctccatcattgatcaaggagagcctaag
ggcactggtgccacgtgtggcaaaaagggcagccaggctggtgctgagggacagccaagc
acagtgaaacgatatactccagcccgcattgcccctgggctgccagggtgccaaaccaag
gaactctctttgtggaaacccacggggccggcaaatatttatccccggtgttcagtcaat
gggaaacctaccagcacccaggtcctgcctgttggctggtccccgtaccaccaggcgtct
ctgctttccattggcatttccagtgccgggcagctgacccccagtcagggggcgcccatc
aggcccaccagcgttgtttcggagttttctggtgtgccatctctcagctccagcgaagcc
gtgcacggacttcctgaggggcaaccacggcctgggggctccttcgttccagagcaggac
cctgttacaaagaacaaaacttgccggattgctgccaagccttatgaagaacaagtcaat
cctgtcctcttgaccctcagccctcagactgggaccctggcactgtctgttcagcctagc
ggtggggacattcgaatgaatcaggggcctgaggaatcagagagccacctctgctctgac
agcactcctaagatggaaggcccccagggggcttgtggcctgaagctggcaggagacacg
aagcctaagaaccaagtgctggccacctacatgtcccatgagctggtcctggccaccccc
cagaacctgcctaagatgcctgagctgcctttgctacctcacgacagccaccccaaggaa
cttatattggacgtggttccgagcagcaggaggggctccagcacagagcgcccacagctt
ggaagccaggtggatctggggcgagtgaaaatggagaaggtggatggtgatgtggtcttc
aatttagccacctgcttccgggctgatggcctcccagtggctccccagaggggccaagct
gaagttcgggctaaggccgggcaggctcgagtgaaacaggaaagcgtaggggtctttgct
tgcaagaacaagtggcagccagatgatgtgacggaatctctgccgcccaagaagatgaag
tgcggcaaagagaaggacagtgaagagcagcagctccagccacaagccaaggccgtggtc
cggagttcccacagacccaagtgccggaagctgcccagtgacccccaggaatccaccaag
aaaagccccaggggggcttcagattcaggaaaagagcacaatggagtcaggggaaagcac
aagcaccggaagccgacaaagccggagtcccagtctccaggaaaacgagccgacagccac
gaggaaggttccttggaaaagaaagcaaagagcagtttccgtgactttattcctgtggtt
ctgagcacccgcacgcgcagtcagtctggaagcatctgtagctcctttgctggcatggca
gacagtgacatgggaagccaggaagtcttccccacagaagaagaagaggaggtaaccccc
accccagctaagcgtcgaaaggtgagaaagacccaacgggacacccagtatcgcagccac
catgcccaggacaagtctctgctgagccagggccgaaggcacctgtggcgagcccgagaa
atgccctggaggacagaggctgcccggcaaatgtgggacaccaatgaggaggaggaggaa
gaagaggaggagggcctgctgaagaggaagaaacgaagacggcagaagagccgaaaatat
cagactggggagtacctgacagagcaagaagacgagcagcggcggaaagggagagcagat
ttaaaggcccgtaagcagaagacttcctcctcccaaagtttggagcaccgcctcaggaac
aggaaccttctcttgcccaacaaagtccaggggatctcggattcaccaaacggtttcctc
ccaaataacctggaagagccagcctgccttgaaaattcagaaaagccatcaggaaaacga
aagtgcaagaccaagcacatggcaaccgtctcagaagaggcaaagggcaaaggtcgttgg
agccagcagaagacacgatctcccaaatctcccaccccagtgaaacccacagaaccatgt
acaccctctaagtcccgaagtgccagctcagaggaggcctcagagtcacctacagcccgg
cagatccccccagaggcacgtcggctcatagtgaacaaaaatgctggtgagaccctcctg
cagagggcggcgcgtcttggctataaggatgttgttctctactgcctccagaaagacagt
gaagatgtgaatcaccgtgacaatgctggctacacagccctgcatgaggcttgttcccgg
ggctggaccgacatcctgaacatcctgctggagcacggggccaacgtgaactgcagtgcg
caggacggcacgaggccagttcatgatgcggtggtcaatgacaacctggagaccatctgg
ctcctgctgtcctatggggccgatcccacactggctacctactcgggtcagacagccatg
aagctggccagcagcgacaccatgaagcgctttctcagtgatcacctctcggatcttcag
ggccgggcagagggtgatcccggtgtatcctgggatttttacagcagttctgtgttggag
gaaaaagacgggtttgcctgtgacctcctacataatcctcctgggagctcagatcaagaa
ggagacgatccgatggaggaggatgatttcatgtttgaactctcagacaagcctcttctc
ccttgctacaacctccaagtgtcagtgtcccgcgggccctgcaactggttcctcttttcc
gatgtcttgaagaggctgaagctttcctcgaggatctttcaggcccggttcccgcacttt
gaaatcaccaccatgcccaaggccgagttctacaggcaggtggcctccagtcagctgctg
acccctgccgagaggcctggaggcttggacgacagatcccccccaggctcctctgagact
gtggagctggtgcggtacgagccagacctacttcggctcctagggtccgaggtggaattc
cagtcttgcaacagttga

KEGG   Homo sapiens (human): 6500
Entry
6500              CDS       T01001                                 
Symbol
SKP1, EMC19, OCP-II, OCP2, SKP1A, TCEB1L, p19A
Name
(RefSeq) S-phase kinase associated protein 1
  KO
K03094  S-phase kinase-associated protein 1
Organism
hsa  Homo sapiens (human)
Pathway
hsa03083  Polycomb repressive complex
hsa04110  Cell cycle
hsa04114  Oocyte meiosis
hsa04120  Ubiquitin mediated proteolysis
hsa04141  Protein processing in endoplasmic reticulum
hsa04310  Wnt signaling pathway
hsa04350  TGF-beta signaling pathway
hsa04710  Circadian rhythm
hsa05131  Shigellosis
hsa05132  Salmonella infection
hsa05170  Human immunodeficiency virus 1 infection
hsa05200  Pathways in cancer
Network
nt06165  Epstein-Barr virus (EBV)
nt06166  Human papillomavirus (HPV)
nt06181  Salmonella
nt06182  Shigella
nt06230  Cell cycle (cancer)
nt06261  Gastric cancer
nt06267  Small cell lung cancer
nt06272  Prostate cancer
nt06516  TNF signaling
nt06523  Epigenetic regulation by Polycomb complexes
  Element
N00091  p27-Cell cycle G1/S
N00092  Amplified MYC to p27-cell cycle G1/S
N00942  Shigella OspG to TNF-NFKB signaling pathway
N01117  Salmonella GogB to TNF-NFKB signaling pathway
N01586  Activation of PRC2.2 by ubiquitination of H2AK119
Brite
KEGG Orthology (KO) [BR:hsa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    6500 (SKP1)
   04120 Ubiquitin mediated proteolysis
    6500 (SKP1)
  09126 Chromosome
   03083 Polycomb repressive complex
    6500 (SKP1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    6500 (SKP1)
   04350 TGF-beta signaling pathway
    6500 (SKP1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    6500 (SKP1)
   04114 Oocyte meiosis
    6500 (SKP1)
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    6500 (SKP1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    6500 (SKP1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    6500 (SKP1)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    6500 (SKP1)
   05131 Shigellosis
    6500 (SKP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hsa04131]
    6500 (SKP1)
   04121 Ubiquitin system [BR:hsa04121]
    6500 (SKP1)
   03036 Chromosome and associated proteins [BR:hsa03036]
    6500 (SKP1)
Membrane trafficking [BR:hsa04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    6500 (SKP1)
Ubiquitin system [BR:hsa04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Adaptor protein
     6500 (SKP1)
   Cul7 complex
     6500 (SKP1)
Chromosome and associated proteins [BR:hsa03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     6500 (SKP1)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     6500 (SKP1)
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 6500
NCBI-ProteinID: NP_733779
OMIM: 601434
HGNC: 10899
Ensembl: ENSG00000113558
UniProt: P63208
Structure
LinkDB
Position
5:complement(134148935..134176950)
AA seq 163 aa
MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
NT seq 492 nt   +upstreamnt  +downstreamnt
atgccttcaattaagttgcagagttctgatggagagatatttgaagttgatgtggaaatt
gccaaacaatctgtgactattaagaccatgttggaagatttgggaatggatgatgaagga
gatgatgacccagttcctctaccaaatgtgaatgcagcaatattaaaaaaggtcattcag
tggtgcacccaccacaaggatgaccctcctcctcctgaagatgatgagaacaaagaaaag
cgaacagatgatatccctgtttgggaccaagaattcctgaaagttgaccaaggaacactt
tttgaactcattctggctgcaaactacttagacatcaaaggtttgcttgatgttacatgc
aagactgttgccaatatgatcaaggggaaaactcctgaggagattcgcaagaccttcaat
atcaaaaatgactttactgaagaggaggaagcccaggtacgcaaagagaaccagtggtgt
gaagagaagtga

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