KEGG   PATHWAY: hyc00630
Entry
hyc00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Hydrogenophaga sp. PAMC20947
Class
Metabolism; Carbohydrate metabolism
Pathway map
hyc00630  Glyoxylate and dicarboxylate metabolism
hyc00630

Module
hyc_M00012  Glyoxylate cycle [PATH:hyc00630]
hyc_M00621  Glycine cleavage system [PATH:hyc00630]
Other DBs
GO: 0046487 0043648
Organism
Hydrogenophaga sp. PAMC20947 [GN:hyc]
Gene
E5678_03180  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
E5678_03075  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
E5678_10535  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
E5678_15875  malate synthase G [KO:K01638] [EC:2.3.3.9]
E5678_01065  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E5678_01030  citrate synthase [KO:K01647] [EC:2.3.3.1]
E5678_01095  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
E5678_05520  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E5678_01075  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E5678_14160  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E5678_04110  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E5678_06715  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
E5678_08295  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E5678_08865  thiolase family protein [KO:K00626] [EC:2.3.1.9]
E5678_10860  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E5678_10945  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
E5678_06710  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
E5678_06650  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
E5678_06655  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
E5678_06665  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
E5678_14810  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
E5678_16535  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
E5678_16530  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
E5678_14035  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
E5678_02140  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
E5678_08550  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
E5678_15690  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
E5678_00830  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
E5678_10710  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
E5678_10695  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
E5678_10690  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
E5678_01860  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
E5678_06760  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E5678_18645  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E5678_17055  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
E5678_02740  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
E5678_08630  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
E5678_02205  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
E5678_02220  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
E5678_03820  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5678_03900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E5678_02215  gcvH; glycine cleavage system protein GcvH [KO:K02437]
E5678_07840  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
E5678_00105  glycerate kinase [KO:K11529] [EC:2.7.1.165]
E5678_07975  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
E5678_08485  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
E5678_08495  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
E5678_08500  formate dehydrogenase beta subunit [KO:K00124]
E5678_08505  formate dehydrogenase subunit gamma [KO:K00127]
E5678_07835  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
E5678_14795  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
E5678_16585  acetamidase/formamidase family protein [KO:K01455] [EC:3.5.1.49]
E5678_07410  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
hyc00010  Glycolysis / Gluconeogenesis
hyc00020  Citrate cycle (TCA cycle)
hyc00030  Pentose phosphate pathway
hyc00053  Ascorbate and aldarate metabolism
hyc00071  Fatty acid degradation
hyc00230  Purine metabolism
hyc00250  Alanine, aspartate and glutamate metabolism
hyc00260  Glycine, serine and threonine metabolism
hyc00620  Pyruvate metabolism
hyc00710  Carbon fixation by Calvin cycle
hyc00750  Vitamin B6 metabolism
hyc00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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