KEGG   PATHWAY: iti03050
Entry
iti03050                    Pathway                                
Name
Proteasome - Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
iti03050  Proteasome
iti03050

Other DBs
GO: 0000502
Organism
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) [GN:iti]
Gene
101955393  Psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
101955531  Psma5; proteasome subunit alpha type-5 isoform X1 [KO:K02729] [EC:3.4.25.1]
101956670  Psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
101957225  Psma6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
101957797  Psmd13; 26S proteasome non-ATPase regulatory subunit 13 isoform X1 [KO:K03039]
101958039  Psmd14; 26S proteasome non-ATPase regulatory subunit 14 isoform X2 [KO:K03030]
101958049  Psma4; proteasome subunit alpha type-4 isoform X1 [KO:K02728] [EC:3.4.25.1]
101958152  Psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
101958214  Sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
101958768  Psmd1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
101958801  Psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
101958918  [KO:K06698]
101959133  Psme4; proteasome activator complex subunit 4 isoform X2 [KO:K06699]
101959144  Psma7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
101959316  Psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
101959834  Psmd4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
101960003  Adrm1; proteasomal ubiquitin receptor ADRM1 isoform X2 [KO:K06691]
101960132  Psmc4; 26S proteasome regulatory subunit 6B [KO:K03063]
101960438  Psmb9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
101960734  Psmb8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
101961362  Psmd2; 26S proteasome non-ATPase regulatory subunit 2 isoform X2 [KO:K03028]
101961482  [KO:K11599]
101961839  Psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
101962844  Psma3; proteasome subunit alpha type-3 isoform X1 [KO:K02727] [EC:3.4.25.1]
101964078  [KO:K02730] [EC:3.4.25.1]
101964151  Psmb10; proteasome subunit beta type-10 [KO:K02733] [EC:3.4.25.1]
101965680  Psme2; proteasome activator complex subunit 2 isoform X1 [KO:K06697]
101965976  Psme1; proteasome activator complex subunit 1 isoform X1 [KO:K06696]
101966464  [KO:K03031]
101966722  Psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
101969024  Ifng; interferon gamma [KO:K04687]
101969147  Psmb6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
101969826  Psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
101970031  Psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
101970805  Psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
101972386  Psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
101972927  Psme3; proteasome activator complex subunit 3 isoform X2 [KO:K06698]
101973480  Psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
101973801  Psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
101974062  [KO:K02738] [EC:3.4.25.1]
101974206  Psmc5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
101974396  Psmc3; 26S proteasome regulatory subunit 6A isoform X1 [KO:K03065]
101974984  Psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
101975410  Psmd11; 26S proteasome non-ATPase regulatory subunit 11 isoform X2 [KO:K03036]
101975567  Psmf1; proteasome inhibitor PI31 subunit isoform X1 [KO:K06700]
101977231  Psmb11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
101977504  Psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
101978162  Psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
101978263  Psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
101978268  Psmc1; 26S proteasome regulatory subunit 4 isoform X1 [KO:K03062]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
iti04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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