KEGG   PATHWAY: iti04120
Entry
iti04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
iti04120  Ubiquitin mediated proteolysis
iti04120

Other DBs
GO: 0016567
Organism
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) [GN:iti]
Gene
101954374  Fbxw11; F-box/WD repeat-containing protein 11 isoform X4 [KO:K03362]
101954381  [KO:K10580] [EC:2.3.2.23]
101954395  Fbxo2; F-box only protein 2 [KO:K10099]
101954526  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X7 [KO:K13305] [EC:2.3.2.26]
101954705  [KO:K02927]
101954858  Cul4a; cullin-4A isoform X1 [KO:K10609]
101955641  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X3 [KO:K06689] [EC:2.3.2.23]
101955823  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
101955882  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
101955920  Fbxw7; F-box/WD repeat-containing protein 7 isoform X3 [KO:K10260]
101955931  Ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
101956098  Ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
101956237  Ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
101956270  Fbxo4; F-box only protein 4 [KO:K10291]
101956502  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
101956581  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
101956666  Traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
101956700  Herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
101956702  [KO:K03872]
101956785  Ube4b; ubiquitin conjugation factor E4 B isoform X2 [KO:K10597] [EC:2.3.2.27]
101956792  Sae1; SUMO-activating enzyme subunit 1 isoform X1 [KO:K10684] [EC:6.2.1.45]
101956834  Brca1; breast cancer type 1 susceptibility protein [KO:K10605] [EC:2.3.2.27]
101957126  Rbx1; E3 ubiquitin-protein ligase RBX1 isoform X2 [KO:K03868] [EC:2.3.2.32]
101957155  Cul3; cullin-3 isoform X1 [KO:K03869]
101957205  Map3k1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
101957219  Prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
101957611  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
101957629  Mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
101957635  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
101957740  Btrc; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
101958255  Cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
101958300  Birc2; baculoviral IAP repeat-containing protein 2 isoform X1 [KO:K16060]
101958894  Herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X9 [KO:K10594] [EC:2.3.2.26]
101958963  Birc3; baculoviral IAP repeat-containing protein 3 isoform X1 [KO:K16060]
101959114  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
101959529  [KO:K10596] [EC:2.3.2.27]
101959656  Elob; elongin-B [KO:K03873]
101959842  [KO:K02927]
101959876  Ube3b; ubiquitin-protein ligase E3B isoform X1 [KO:K10588] [EC:2.3.2.26]
101959927  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
101960065  Ube2k; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
101960503  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [KO:K10144] [EC:2.3.2.27]
101960597  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
101960650  Cdc16; cell division cycle protein 16 homolog isoform X1 [KO:K03353]
101960849  Trim37; E3 ubiquitin-protein ligase TRIM37 isoform X8 [KO:K10608] [EC:2.3.2.27]
101961093  Cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
101961331  Ube2m; NEDD8-conjugating enzyme Ubc12 isoform X1 [KO:K10579] [EC:2.3.2.34]
101961393  Cul7; cullin-7 isoform X1 [KO:K10613]
101961685  Anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
101961816  Ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
101961824  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X6 [KO:K10590] [EC:2.3.2.26]
101962101  Pias2; E3 SUMO-protein ligase PIAS2 isoform X2 [KO:K16063] [EC:2.3.2.-]
101962193  Cdc23; cell division cycle protein 23 homolog [KO:K03355]
101962652  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
101962771  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
101963283  Siah1; E3 ubiquitin-protein ligase SIAH1 isoform X1 [KO:K04506] [EC:2.3.2.27]
101963424  Anapc7; anaphase-promoting complex subunit 7 isoform X1 [KO:K03354]
101963871  Klhl13; kelch-like protein 13 isoform X6 [KO:K10447]
101963907  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
101964194  Cdc27; cell division cycle protein 27 homolog isoform X3 [KO:K03350]
101964207  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
101964282  Birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
101964420  Keap1; kelch-like ECH-associated protein 1 [KO:K10456]
101964590  Rhobtb1; rho-related BTB domain-containing protein 1 isoform X1 [KO:K07868]
101964889  Ube2w; ubiquitin-conjugating enzyme E2 W isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
101965010  Ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
101965085  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
101965370  Eloc; elongin-C [KO:K03872]
101965379  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
101965459  Uba6; ubiquitin-like modifier-activating enzyme 6 isoform X1 [KO:K10699] [EC:6.2.1.45]
101965503  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X2 [KO:K04678] [EC:2.3.2.26]
101965517  Ube2z; ubiquitin-conjugating enzyme E2 Z isoform X1 [KO:K10585] [EC:2.3.2.23]
101965526  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
101966168  Ube2b; ubiquitin-conjugating enzyme E2 B isoform X1 [KO:K10574] [EC:2.3.2.23]
101966661  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
101966711  Ube2f; NEDD8-conjugating enzyme UBE2F isoform X2 [KO:K10687] [EC:2.3.2.34]
101966763  [KO:K02977]
101966818  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
101966960  Anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
101967043  Ube2u; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
101967116  Fzr1; fizzy-related protein homolog isoform X1 [KO:K03364]
101967152  Ubox5; RING finger protein 37 isoform X1 [KO:K10600]
101967226  Skp1; S-phase kinase-associated protein 1 isoform X1 [KO:K03094]
101967492  [KO:K03094]
101967635  Det1; DET1 homolog [KO:K10571]
101967740  Fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
101968452  Cdc34; ubiquitin-conjugating enzyme E2 R1 isoform X1 [KO:K02207] [EC:2.3.2.23]
101968536  Cul1; cullin-1 [KO:K03347]
101968760  Ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
101968843  Ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
101968960  Herc2; E3 ubiquitin-protein ligase HERC2 isoform X3 [KO:K10595] [EC:2.3.2.26]
101969119  [KO:K06689] [EC:2.3.2.23]
101969592  Cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
101969616  Klhl9; kelch-like protein 9 [KO:K10447]
101969625  [KO:K10571]
101969708  Ube2l3; ubiquitin-conjugating enzyme E2 L3 isoform X1 [KO:K04552] [EC:2.3.2.23]
101969882  Smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
101970077  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
101970285  [KO:K03868] [EC:2.3.2.32]
101970462  Ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
101970659  Ubc; polyubiquitin-C isoform X2 [KO:K02927]
101970846  [KO:K10596] [EC:2.3.2.27]
101970927  Uba7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
101971043  Cul2; cullin-2 [KO:K03870]
101971089  Huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
101971156  Ube3a; ubiquitin-protein ligase E3A isoform X3 [KO:K10587] [EC:2.3.2.26]
101971161  Ube2e2; ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
101971429  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
101971653  Ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X2 [KO:K20217] [EC:2.3.2.23]
101971676  [KO:K06643] [EC:2.3.2.27]
101971909  Ube2d3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
101972130  Syvn1; E3 ubiquitin-protein ligase synoviolin isoform X1 [KO:K10601] [EC:2.3.2.27]
101972239  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X6 [KO:K10593] [EC:2.3.2.26]
101972274  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
101972943  [KO:K06689] [EC:2.3.2.23]
101972948  Ube2e3; ubiquitin-conjugating enzyme E2 E3 isoform X2 [KO:K20217] [EC:2.3.2.23]
101973238  Ube2c; ubiquitin-conjugating enzyme E2 C isoform X1 [KO:K06688] [EC:2.3.2.23]
101973325  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
101973340  Stub1; E3 ubiquitin-protein ligase CHIP isoform X3 [KO:K09561] [EC:2.3.2.27]
101973355  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 isoform X1 [KO:K10602] [EC:2.3.2.27]
101973820  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
101974254  [KO:K04725] [EC:2.3.2.27]
101974387  Rnf7; RING-box protein 2 isoform X1 [KO:K10611]
101974696  Pias1; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
101974709  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
101975137  Ddb1; DNA damage-binding protein 1 [KO:K10610]
101975141  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme [KO:K10581] [EC:2.3.2.24]
101975210  Aire; autoimmune regulator [KO:K10603]
101975329  Cul5; cullin-5 isoform X1 [KO:K10612]
101975340  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
101975610  Uba2; SUMO-activating enzyme subunit 2 isoform X1 [KO:K10685] [EC:6.2.1.45]
101975689  Skp2; S-phase kinase-associated protein 2 isoform X4 [KO:K03875]
101975776  Anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
101975815  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
101975941  Ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
101975997  [KO:K10580] [EC:2.3.2.23]
101976475  Uba3; NEDD8-activating enzyme E1 catalytic subunit [KO:K10686] [EC:6.2.1.64]
101976741  Ddb2; DNA damage-binding protein 2 isoform X2 [KO:K10140]
101976875  Cul4b; cullin-4B isoform X4 [KO:K10609]
101977020  Prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
101977099  [KO:K02207] [EC:2.3.2.23]
101977746  Anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
101977750  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X3 [KO:K05633] [EC:2.3.2.26]
101977754  Anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
101977844  Itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
101977945  [KO:K10575] [EC:2.3.2.23]
101977995  Birc6; baculoviral IAP repeat-containing protein 6 isoform X2 [KO:K10586] [EC:2.3.2.23]
101978266  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
101978325  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
101978440  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
101978506  Rhobtb2; rho-related BTB domain-containing protein 2 [KO:K07868]
101978682  Ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
101978714  [KO:K20217] [EC:2.3.2.23]
120885079  [KO:K03872]
120885624  [KO:K03872]
120888552  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
iti03050  Proteasome
KO pathway
ko04120   

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