KEGG   PATHWAY: kie00020
Entry
kie00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kluyvera intermedia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kie00020  Citrate cycle (TCA cycle)
kie00020

Module
kie_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kie00020]
kie_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kie00020]
kie_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kie00020]
kie_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kie00020]
kie_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kie00020]
Other DBs
GO: 0006099
Organism
Kluyvera intermedia [GN:kie]
Gene
NCTC12125_02270  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC12125_01609  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
NCTC12125_02913  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC12125_01751  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC12125_02265  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC12125_02264  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC12125_02917  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC12125_02262  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC12125_02263  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC12125_02267  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NCTC12125_02266  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NCTC12125_02269  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
NCTC12125_02268  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
NCTC12125_03320  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NCTC12125_03321  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NCTC12125_03322  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
NCTC12125_03323  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
NCTC12125_00699  fumA_1; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
NCTC12125_01457  fumA_2; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
NCTC12125_01456  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC12125_01188  Protein of uncharacterised function (DUF2767) [KO:K01675] [EC:4.2.1.2]
NCTC12125_04400  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC12125_00448  mqo_1; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC12125_04805  mqo_2; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
NCTC12125_04248  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC12125_02919  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC12125_02918  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
NCTC12125_01546  porB; Pyruvate synthase subunit porB [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kie00010  Glycolysis / Gluconeogenesis
kie00053  Ascorbate and aldarate metabolism
kie00061  Fatty acid biosynthesis
kie00071  Fatty acid degradation
kie00190  Oxidative phosphorylation
kie00220  Arginine biosynthesis
kie00250  Alanine, aspartate and glutamate metabolism
kie00280  Valine, leucine and isoleucine degradation
kie00350  Tyrosine metabolism
kie00470  D-Amino acid metabolism
kie00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system