KEGG   PATHWAY: klu00020
Entry
klu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kluyvera sp. CRP
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
klu00020  Citrate cycle (TCA cycle)
klu00020

Module
klu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:klu00020]
klu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:klu00020]
klu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:klu00020]
klu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:klu00020]
klu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:klu00020]
Other DBs
GO: 0006099
Organism
Kluyvera sp. CRP [GN:klu]
Gene
K7B04_12405  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
K7B04_15835  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
K7B04_00815  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K7B04_14905  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K7B04_12430  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K7B04_12435  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
K7B04_00835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K7B04_12445  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
K7B04_12440  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
K7B04_12420  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K7B04_12425  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
K7B04_12410  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
K7B04_12415  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
K7B04_02845  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
K7B04_02850  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
K7B04_02855  frdC; fumarate reductase subunit FrdC [KO:K00246]
K7B04_02860  frdD; fumarate reductase subunit FrdD [KO:K00247]
K7B04_16795  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K7B04_20295  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
K7B04_16805  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
K7B04_16240  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
K7B04_07765  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K7B04_09485  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K7B04_21740  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
K7B04_07050  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
K7B04_00845  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
K7B04_00840  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
K7B04_16315  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
klu00010  Glycolysis / Gluconeogenesis
klu00053  Ascorbate and aldarate metabolism
klu00061  Fatty acid biosynthesis
klu00071  Fatty acid degradation
klu00190  Oxidative phosphorylation
klu00220  Arginine biosynthesis
klu00250  Alanine, aspartate and glutamate metabolism
klu00280  Valine, leucine and isoleucine degradation
klu00350  Tyrosine metabolism
klu00470  D-Amino acid metabolism
klu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system