KEGG   PATHWAY: kpg00020
Entry
kpg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Klebsiella pneumoniae subsp. pneumoniae KPNIH32
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kpg00020  Citrate cycle (TCA cycle)
kpg00020

Module
kpg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kpg00020]
kpg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kpg00020]
kpg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kpg00020]
kpg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kpg00020]
kpg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kpg00020]
Other DBs
GO: 0006099
Organism
Klebsiella pneumoniae subsp. pneumoniae KPNIH32 [GN:kpg]
Gene
KPNIH32_06795  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNIH32_08150  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
KPNIH32_11200  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KPNIH32_04485  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KPNIH32_10435  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KPNIH32_08175  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
KPNIH32_08180  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
KPNIH32_05255  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNIH32_04460  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KPNIH32_08190  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
KPNIH32_08185  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
KPNIH32_08165  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
KPNIH32_08170  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
KPNIH32_08155  sdhC; succinate dehydrogenase [KO:K00241]
KPNIH32_08160  sdhD; succinate dehydrogenase [KO:K00242]
KPNIH32_02195  fumarate reductase [KO:K00244] [EC:1.3.5.1]
KPNIH32_02190  fumarate reductase [KO:K00245] [EC:1.3.5.1]
KPNIH32_02185  fumarate reductase [KO:K00246]
KPNIH32_02180  fumarate reductase [KO:K00247]
KPNIH32_12400  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNIH32_12565  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KPNIH32_12405  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KPNIH32_15750  hypothetical protein [KO:K01675] [EC:4.2.1.2]
KPNIH32_24930  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KPNIH32_12610  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNIH32_18990  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KPNIH32_25705  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPNIH32_16590  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KPNIH32_04450  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
KPNIH32_04455  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
KPNIH32_05260  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
KPNIH32_12085  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kpg00010  Glycolysis / Gluconeogenesis
kpg00053  Ascorbate and aldarate metabolism
kpg00061  Fatty acid biosynthesis
kpg00071  Fatty acid degradation
kpg00190  Oxidative phosphorylation
kpg00220  Arginine biosynthesis
kpg00250  Alanine, aspartate and glutamate metabolism
kpg00280  Valine, leucine and isoleucine degradation
kpg00350  Tyrosine metabolism
kpg00470  D-Amino acid metabolism
kpg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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