KEGG   PATHWAY: kse00020
Entry
kse00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kytococcus sedentarius
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kse00020  Citrate cycle (TCA cycle)
kse00020

Module
kse_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kse00020]
kse_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kse00020]
kse_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kse00020]
kse_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kse00020]
Other DBs
GO: 0006099
Organism
Kytococcus sedentarius [GN:kse]
Gene
Ksed_19470  citrate synthase [KO:K01647] [EC:2.3.3.1]
Ksed_15750  aconitase [KO:K01681] [EC:4.2.1.3]
Ksed_19690  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Ksed_18450  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Ksed_06120  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ksed_16340  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ksed_07740  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Ksed_07730  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Ksed_23330  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Ksed_23320  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Ksed_23340  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Ksed_07330  fumarase [KO:K01679] [EC:4.2.1.2]
Ksed_07840  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Ksed_12060  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Ksed_16350  2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kse00010  Glycolysis / Gluconeogenesis
kse00053  Ascorbate and aldarate metabolism
kse00061  Fatty acid biosynthesis
kse00071  Fatty acid degradation
kse00190  Oxidative phosphorylation
kse00220  Arginine biosynthesis
kse00250  Alanine, aspartate and glutamate metabolism
kse00280  Valine, leucine and isoleucine degradation
kse00350  Tyrosine metabolism
kse00470  D-Amino acid metabolism
kse00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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