PATHWAY: laq00470
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Entry
laq00470 Pathway
Name
D-Amino acid metabolism - Lysobacter antibioticus ATCC 29479
Class
Metabolism; Metabolism of other amino acids
BRITE hierarchy
Pathway map
laq00470
D-Amino acid metabolism
Ortholog table
Module
laq_M00948
Hydroxyproline degradation, trans-4-hydroxy-L-proline => 2-oxoglutarate [PATH:
laq00470
]
Other DBs
GO:
0046416
Organism
Lysobacter antibioticus ATCC 29479 [GN:
laq
]
Gene
GLA29479_1062
alr; alanine racemase [KO:
K01775
] [EC:
5.1.1.1
]
GLA29479_2029
ddlB; D-alanine--D-alanine ligase B [KO:
K01921
] [EC:
6.3.2.4
]
GLA29479_1315
racX; putative aspartate/glutamate racemase [KO:
K25316
] [EC:
5.1.1.10
]
GLA29479_3068
glsA1; glutaminase 1 [KO:
K01425
] [EC:
3.5.1.2
]
GLA29479_2953
ykfB; L-Ala-D/L-Glu epimerase [KO:
K19802
] [EC:
5.1.1.20
5.1.1.25
]
GLA29479_4572
aspartate racemase family protein [KO:
K01779
] [EC:
5.1.1.13
]
GLA29479_2934
putative D-serine deaminase (D-serine dehydratase) protein [KO:
K01753
] [EC:
4.3.1.18
]
GLA29479_4924
dapF; diaminopimelate epimerase [KO:
K01778
] [EC:
5.1.1.7
]
GLA29479_625
aspartate kinase domain protein [KO:
K12526
] [EC:
4.1.1.20
2.7.2.4
]
GLA29479_2942
4-hydroxyproline epimerase [KO:
K12658
] [EC:
5.1.1.8
]
GLA29479_2945
pyridine nucleotide-disulfide oxidoreductase family protein [KO:
K22549
] [EC:1.5.99.-]
GLA29479_2943
FAD dependent oxidoreductase family protein [KO:
K21061
] [EC:1.5.99.-]
GLA29479_2944
soxA; sarcosine oxidase alpha subunit [KO:
K22550
]
GLA29479_2946
dihydrodipicolinate synthetase family protein [KO:
K21062
] [EC:
3.5.4.22
]
GLA29479_2947
aldehyde dehydrogenase family protein [KO:
K13877
] [EC:
1.2.1.26
]
GLA29479_879
FAD dependent oxidoreductase family protein [KO:
K00285
] [EC:
1.4.5.1
]
Compound
C00022
Pyruvate
C00025
L-Glutamate
C00026
2-Oxoglutarate
C00036
Oxaloacetate
C00037
Glycine
C00041
L-Alanine
C00047
L-Lysine
C00049
L-Aspartate
C00062
L-Arginine
C00064
L-Glutamine
C00065
L-Serine
C00073
L-Methionine
C00077
L-Ornithine
C00079
L-Phenylalanine
C00084
Acetaldehyde
C00097
L-Cysteine
C00133
D-Alanine
C00134
Putrescine
C00135
L-Histidine
C00148
L-Proline
C00166
Phenylpyruvate
C00188
L-Threonine
C00217
D-Glutamate
C00402
D-Aspartate
C00431
5-Aminopentanoate
C00433
2,5-Dioxopentanoate
C00515
D-Ornithine
C00624
N-Acetyl-L-glutamate
C00666
LL-2,6-Diaminoheptanedioate
C00680
meso-2,6-Diaminoheptanedioate
C00692
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
C00739
D-Lysine
C00740
D-Serine
C00763
D-Proline
C00792
D-Arginine
C00793
D-Cysteine
C00819
D-Glutamine
C00820
D-Threonine
C00855
D-Methionine
C00993
D-Alanyl-D-alanine
C01110
5-Amino-2-oxopentanoic acid
C01157
Hydroxyproline
C01180
4-Methylthio-2-oxobutanoic acid
C01667
Bacitracin
C01672
Cadaverine
C01726
D-Lombricine
C02237
5-Oxo-D-proline
C02265
D-Phenylalanine
C02855
N-Phospho-D-lombricine
C03239
6-Amino-2-oxohexanoate
C03341
2-Amino-4-oxopentanoic acid
C03440
cis-4-Hydroxy-D-proline
C03564
1-Pyrroline-2-carboxylate
C03771
5-Guanidino-2-oxopentanoate
C03933
5-D-Glutamyl-D-glutamyl-peptide
C03943
(2R,4S)-2,4-Diaminopentanoate
C04260
O-D-Alanyl-poly(ribitol phosphate)
C04282
1-Pyrroline-4-hydroxy-2-carboxylate
C04457
D-Alanyl-alanyl-poly(glycerolphosphate)
C05161
(2R,5S)-2,5-Diaminohexanoate
C05620
N-Acetyl-D-phenylalanine
C05825
2-Amino-5-oxohexanoate
C05939
Linatine
C05941
2-Oxo-4-hydroxy-5-aminovalerate
C05942
Pyrrole-2-carboxylate
C06419
D-Histidine
C22024
Staphylopine
C22025
(2S)-2-Amino-4-{[(1R)-1-carboxy-2-(1H-imidazol-4-yl)ethyl]amino}butanoate
C22611
N-Acetyl-D-glutamate
Reference
PMID:
33788945
Authors
Miyamoto T, Homma H
Title
D-Amino acid metabolism in bacteria.
Journal
J Biochem 170:5-13 (2021)
DOI:
10.1093/jb/mvab043
Reference
PMID:
27230378
Authors
Ghssein G, Brutesco C, Ouerdane L, Fojcik C, Izaute A, Wang S, Hajjar C, Lobinski R, Lemaire D, Richaud P, Voulhoux R, Espaillat A, Cava F, Pignol D, Borezee-Durant E, Arnoux P
Title
Biosynthesis of a broad-spectrum nicotianamine-like metallophore in Staphylococcus aureus.
Journal
Science 352:1105-9 (2016)
DOI:
10.1126/science.aaf1018
Related
pathway
laq00010
Glycolysis / Gluconeogenesis
laq00020
Citrate cycle (TCA cycle)
laq00250
Alanine, aspartate and glutamate metabolism
laq00260
Glycine, serine and threonine metabolism
laq00270
Cysteine and methionine metabolism
laq00300
Lysine biosynthesis
laq00310
Lysine degradation
laq00330
Arginine and proline metabolism
laq00340
Histidine metabolism
laq00360
Phenylalanine metabolism
laq00550
Peptidoglycan biosynthesis
laq00620
Pyruvate metabolism
KO pathway
ko00470
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