KEGG   PATHWAY: laz00020
Entry
laz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lelliottia amnigena
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
laz00020  Citrate cycle (TCA cycle)
laz00020

Module
laz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:laz00020]
laz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:laz00020]
laz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:laz00020]
laz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:laz00020]
laz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:laz00020]
Other DBs
GO: 0006099
Organism
Lelliottia amnigena [GN:laz]
Gene
A8A57_06490  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A8A57_10875  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A8A57_11770  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
A8A57_03805  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A8A57_08635  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A8A57_06515  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A8A57_06520  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A8A57_03790  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A8A57_06530  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A8A57_06525  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A8A57_06505  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A8A57_06510  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A8A57_06495  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
A8A57_06500  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A8A57_01985  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
A8A57_01980  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
A8A57_01975  fumarate reductase subunit C [KO:K00246]
A8A57_01970  fumarate reductase subunit D [KO:K00247]
A8A57_09640  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A8A57_09645  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
A8A57_09360  hypothetical protein [KO:K01675] [EC:4.2.1.2]
A8A57_17335  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
A8A57_19080  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A8A57_14480  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A8A57_19855  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A8A57_03780  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A8A57_03785  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
A8A57_11405  pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
laz00010  Glycolysis / Gluconeogenesis
laz00053  Ascorbate and aldarate metabolism
laz00061  Fatty acid biosynthesis
laz00071  Fatty acid degradation
laz00190  Oxidative phosphorylation
laz00220  Arginine biosynthesis
laz00250  Alanine, aspartate and glutamate metabolism
laz00280  Valine, leucine and isoleucine degradation
laz00350  Tyrosine metabolism
laz00470  D-Amino acid metabolism
laz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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