KEGG   PATHWAY: lcas00020
Entry
lcas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lysobacter caseinilyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcas00020  Citrate cycle (TCA cycle)
lcas00020

Module
lcas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lcas00020]
lcas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lcas00020]
lcas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lcas00020]
lcas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lcas00020]
lcas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lcas00020]
Other DBs
GO: 0006099
Organism
Lysobacter caseinilyticus [GN:lcas]
Gene
LYSCAS_17290  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LYSCAS_28670  rpfA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LYSCAS_12620  icd_2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LYSCAS_02780  icd_1; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
LYSCAS_30370  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
LYSCAS_30380  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LYSCAS_15800  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LYSCAS_30390  ldp; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LYSCAS_07600  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LYSCAS_07610  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
LYSCAS_24770  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LYSCAS_24780  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LYSCAS_24750  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LYSCAS_24760  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
LYSCAS_24550  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
LYSCAS_30320  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LYSCAS_04660  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LYSCAS_18060  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
LYSCAS_14830  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
LYSCAS_15790  phdB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lcas00010  Glycolysis / Gluconeogenesis
lcas00053  Ascorbate and aldarate metabolism
lcas00061  Fatty acid biosynthesis
lcas00071  Fatty acid degradation
lcas00190  Oxidative phosphorylation
lcas00220  Arginine biosynthesis
lcas00250  Alanine, aspartate and glutamate metabolism
lcas00280  Valine, leucine and isoleucine degradation
lcas00350  Tyrosine metabolism
lcas00470  D-Amino acid metabolism
lcas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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