KEGG   PATHWAY: lpnu00020
Entry
lpnu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Leclercia pneumoniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpnu00020  Citrate cycle (TCA cycle)
lpnu00020

Module
lpnu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lpnu00020]
lpnu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lpnu00020]
lpnu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpnu00020]
lpnu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lpnu00020]
lpnu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpnu00020]
Other DBs
GO: 0006099
Organism
Leclercia pneumoniae [GN:lpnu]
Gene
KQ929_01145  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KQ929_01890  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KQ929_03365  [KO:K01774]
KQ929_06245  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KQ929_08940  acnA; aconitate hydratase AcnA [KO:K27802]
KQ929_09140  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
KQ929_11035  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KQ929_11040  [KO:K01676] [EC:4.2.1.2]
KQ929_11425  fumD; fumarate hydratase FumD [KO:K01675]
KQ929_12260  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KQ929_14605  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KQ929_14610  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KQ929_14615  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KQ929_14620  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KQ929_14625  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
KQ929_14630  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KQ929_14635  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
KQ929_14640  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
KQ929_14645  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KQ929_17040  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KQ929_17055  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KQ929_17060  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
KQ929_17065  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KQ929_18720  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
KQ929_18725  [KO:K00245] [EC:1.3.5.1]
KQ929_18730  frdC; fumarate reductase subunit FrdC [KO:K00246]
KQ929_18735  frdD; fumarate reductase subunit FrdD [KO:K00247]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpnu00010  Glycolysis / Gluconeogenesis
lpnu00053  Ascorbate and aldarate metabolism
lpnu00061  Fatty acid biosynthesis
lpnu00071  Fatty acid degradation
lpnu00190  Oxidative phosphorylation
lpnu00220  Arginine biosynthesis
lpnu00250  Alanine, aspartate and glutamate metabolism
lpnu00280  Valine, leucine and isoleucine degradation
lpnu00350  Tyrosine metabolism
lpnu00470  D-Amino acid metabolism
lpnu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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