KEGG   PATHWAY: lrs00030
Entry
lrs00030                    Pathway                                
Name
Pentose phosphate pathway - Limnoglobus roseus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lrs00030  Pentose phosphate pathway
lrs00030

Module
lrs_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lrs00030]
lrs_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lrs00030]
lrs_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lrs00030]
lrs_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lrs00030]
Other DBs
GO: 0006098
Organism
Limnoglobus roseus [GN:lrs]
Gene
PX52LOC_08201  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PX52LOC_00820  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
PX52LOC_05502  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
PX52LOC_06159  lactonase family protein [KO:K07404] [EC:3.1.1.31]
PX52LOC_01099  lactonase family protein [KO:K07404] [EC:3.1.1.31]
PX52LOC_02765  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PX52LOC_02898  gnd; 6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
PX52LOC_05124  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PX52LOC_07276  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
PX52LOC_04046  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
PX52LOC_08210  transaldolase [KO:K00616] [EC:2.2.1.2]
PX52LOC_00239  ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
PX52LOC_03033  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
PX52LOC_03702  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
PX52LOC_03789  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
PX52LOC_07447  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
PX52LOC_03849  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
PX52LOC_04148  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
PX52LOC_03466  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
PX52LOC_08199  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
PX52LOC_06863  KR domain-containing protein [KO:K00034] [EC:1.1.1.47]
PX52LOC_01950  SDR family NAD(P)-dependent oxidoreductase [KO:K00034] [EC:1.1.1.47]
PX52LOC_00498  putative beta-propeller-type glycoside hydrolase [KO:K00117] [EC:1.1.5.2]
PX52LOC_01383  putative beta-propeller-type glycoside hydrolase [KO:K00117] [EC:1.1.5.2]
PX52LOC_04333  CE0/PF00756 - putative alpha/beta-hydrolase-type carbohydrate esterase [KO:K01053] [EC:3.1.1.17]
PX52LOC_00345  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
PX52LOC_02614  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
PX52LOC_02724  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
PX52LOC_07383  gluconokinase [KO:K00851] [EC:2.7.1.12]
PX52LOC_03540  sugar kinase [KO:K00874] [EC:2.7.1.45]
PX52LOC_05510  sugar kinase [KO:K00874] [EC:2.7.1.45]
PX52LOC_00464  hypothetical protein [KO:K11529] [EC:2.7.1.165]
PX52LOC_07470  diphosphate--fructose-6-phosphate 1-phosphotransferase [KO:K00850] [EC:2.7.1.11]
PX52LOC_00875  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lrs00010  Glycolysis / Gluconeogenesis
lrs00040  Pentose and glucuronate interconversions
lrs00052  Galactose metabolism
lrs00230  Purine metabolism
lrs00240  Pyrimidine metabolism
lrs00340  Histidine metabolism
lrs00630  Glyoxylate and dicarboxylate metabolism
lrs00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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