KEGG   PATHWAY: lsol00020
Entry
lsol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lysobacter soli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lsol00020  Citrate cycle (TCA cycle)
lsol00020

Module
lsol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lsol00020]
lsol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lsol00020]
lsol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lsol00020]
lsol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lsol00020]
Other DBs
GO: 0006099
Organism
Lysobacter soli [GN:lsol]
Gene
GOY17_15900  citrate synthase [KO:K01647] [EC:2.3.3.1]
GOY17_10485  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GOY17_10470  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GOY17_18460  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GOY17_12880  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GOY17_07735  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GOY17_07730  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GOY17_16970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOY17_07725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOY17_03985  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GOY17_03980  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GOY17_00145  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
GOY17_11320  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GOY17_11315  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GOY17_11330  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GOY17_11325  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GOY17_11425  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GOY17_07760  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
GOY17_05140  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GOY17_15025  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
GOY17_17320  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GOY17_16980  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lsol00010  Glycolysis / Gluconeogenesis
lsol00053  Ascorbate and aldarate metabolism
lsol00061  Fatty acid biosynthesis
lsol00071  Fatty acid degradation
lsol00190  Oxidative phosphorylation
lsol00220  Arginine biosynthesis
lsol00250  Alanine, aspartate and glutamate metabolism
lsol00280  Valine, leucine and isoleucine degradation
lsol00350  Tyrosine metabolism
lsol00470  D-Amino acid metabolism
lsol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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