KEGG   PATHWAY: lsol00260
Entry
lsol00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Lysobacter soli
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
lsol00260  Glycine, serine and threonine metabolism
lsol00260

Module
lsol_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:lsol00260]
lsol_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:lsol00260]
lsol_M00621  Glycine cleavage system [PATH:lsol00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Lysobacter soli [GN:lsol]
Gene
GOY17_16230  thrA; bifunctional aspartate kinase/homoserine dehydrogenase I [KO:K12524] [EC:2.7.2.4 1.1.1.3]
GOY17_14350  bifunctional aspartate kinase/diaminopimelate decarboxylase [KO:K12526] [EC:4.1.1.20 2.7.2.4]
GOY17_07025  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
GOY17_14885  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
GOY17_16235  homoserine kinase [KO:K00872] [EC:2.7.1.39]
GOY17_16820  threonine synthase [KO:K01733] [EC:4.2.3.1]
GOY17_16240  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
GOY17_00995  ltaE; low-specificity L-threonine aldolase [KO:K01620] [EC:4.1.2.48]
GOY17_03765  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GOY17_08775  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
GOY17_07015  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
GOY17_17780  2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
GOY17_14805  kinase [KO:K15918] [EC:2.7.1.31]
GOY17_12005  serA; phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
GOY17_11045  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
GOY17_05280  kbl; glycine C-acetyltransferase [KO:K00639] [EC:2.3.1.29]
GOY17_05285  L-threonine 3-dehydrogenase [KO:K00060] [EC:1.1.1.103]
GOY17_13025  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GOY17_15075  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GOY17_16970  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOY17_07725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOY17_15070  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GOY17_03590  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
GOY17_07350  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
GOY17_03405  pyridoxal-phosphate dependent enzyme [KO:K01697] [EC:4.2.1.22]
GOY17_03425  cystathionine gamma-synthase [KO:K01758] [EC:4.4.1.1]
GOY17_14860  L-serine ammonia-lyase [KO:K01752] [EC:4.3.1.17]
GOY17_00435  pyridoxal-phosphate dependent enzyme [KO:K01754] [EC:4.3.1.19]
GOY17_16275  threonine dehydratase [KO:K01754] [EC:4.3.1.19]
GOY17_00215  amino acid racemase [KO:K25316] [EC:5.1.1.10]
GOY17_07055  tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
GOY17_07050  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
lsol00010  Glycolysis / Gluconeogenesis
lsol00020  Citrate cycle (TCA cycle)
lsol00230  Purine metabolism
lsol00250  Alanine, aspartate and glutamate metabolism
lsol00270  Cysteine and methionine metabolism
lsol00290  Valine, leucine and isoleucine biosynthesis
lsol00300  Lysine biosynthesis
lsol00330  Arginine and proline metabolism
lsol00460  Cyanoamino acid metabolism
lsol00470  D-Amino acid metabolism
lsol00564  Glycerophospholipid metabolism
lsol00600  Sphingolipid metabolism
lsol00620  Pyruvate metabolism
lsol00630  Glyoxylate and dicarboxylate metabolism
lsol00640  Propanoate metabolism
lsol00680  Methane metabolism
lsol00860  Porphyrin metabolism
lsol00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

DBGET integrated database retrieval system