KEGG   PATHWAY: mbk00020
Entry
mbk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis variant bovis BCG Korea 1168P
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbk00020  Citrate cycle (TCA cycle)
mbk00020

Module
mbk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbk00020]
mbk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbk00020]
mbk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbk00020]
mbk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbk00020]
mbk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbk00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis variant bovis BCG Korea 1168P [GN:mbk]
Gene
K60_009500  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
K60_012170  Methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
K60_009570  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
K60_015820  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
K60_000730  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K60_034740  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
K60_013400  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
K60_004880  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
K60_025500  oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
K60_025490  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
K60_010200  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
K60_010190  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
K60_002700  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K60_034500  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
K60_002690  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K60_034510  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
K60_034480  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
K60_034490  SdhD [KO:K00242]
K60_016510  fumarate reductase flavoprotein subunit frdA [KO:K00244] [EC:1.3.5.1]
K60_016520  putative 4Fe-4S binding domain protein [KO:K00245 K00247] [EC:1.3.5.1]
K60_011830  fumarase fum [KO:K01679] [EC:4.2.1.2]
K60_013310  malate dehydrogenase mdh [KO:K00024] [EC:1.1.1.37]
K60_029510  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
K60_030760  pyruvate carboxylase pca [KO:K01958] [EC:6.4.1.1]
K60_002320  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
K60_023260  pyruvate dehydrogenase E1 component aceE [KO:K00163] [EC:1.2.4.1]
K60_022970  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbk00010  Glycolysis / Gluconeogenesis
mbk00053  Ascorbate and aldarate metabolism
mbk00061  Fatty acid biosynthesis
mbk00071  Fatty acid degradation
mbk00190  Oxidative phosphorylation
mbk00220  Arginine biosynthesis
mbk00250  Alanine, aspartate and glutamate metabolism
mbk00280  Valine, leucine and isoleucine degradation
mbk00350  Tyrosine metabolism
mbk00470  D-Amino acid metabolism
mbk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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