KEGG   PATHWAY: mboc00020
Entry
mboc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Macrococcus bovicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mboc00020  Citrate cycle (TCA cycle)
mboc00020

Module
mboc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mboc00020]
mboc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mboc00020]
mboc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mboc00020]
mboc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mboc00020]
mboc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mboc00020]
Other DBs
GO: 0006099
Organism
Macrococcus bovicus [GN:mboc]
Gene
QSV55_00835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QSV55_02520  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QSV55_04290  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QSV55_04295  [KO:K00162] [EC:1.2.4.1]
QSV55_04300  [KO:K00627] [EC:2.3.1.12]
QSV55_04305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QSV55_04395  [KO:K01958] [EC:6.4.1.1]
QSV55_05030  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QSV55_05035  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QSV55_05265  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
QSV55_05270  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
QSV55_05580  acnA; aconitate hydratase AcnA [KO:K27802]
QSV55_05790  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QSV55_05795  [KO:K00164] [EC:1.2.4.2]
QSV55_07470  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QSV55_07475  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QSV55_07480  [KO:K00241]
QSV55_07715  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QSV55_07720  [KO:K01659] [EC:2.3.3.5]
QSV55_08395  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
QSV55_08720  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mboc00010  Glycolysis / Gluconeogenesis
mboc00061  Fatty acid biosynthesis
mboc00071  Fatty acid degradation
mboc00190  Oxidative phosphorylation
mboc00220  Arginine biosynthesis
mboc00250  Alanine, aspartate and glutamate metabolism
mboc00280  Valine, leucine and isoleucine degradation
mboc00350  Tyrosine metabolism
mboc00470  D-Amino acid metabolism
mboc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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