KEGG   PATHWAY: mcat00020
Entry
mcat00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Moraxella catarrhalis 25239
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcat00020  Citrate cycle (TCA cycle)
mcat00020

Module
mcat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcat00020]
mcat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcat00020]
mcat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcat00020]
mcat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcat00020]
mcat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcat00020]
Other DBs
GO: 0006099
Organism
Moraxella catarrhalis 25239 [GN:mcat]
Gene
MC25239_00107  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
MC25239_00411  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MC25239_00350  icd2; Isocitrate dehydrogenase [NADP] 2 [KO:K00031] [EC:1.1.1.42]
MC25239_00112  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MC25239_00113  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MC25239_00114  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MC25239_00653  scpC; Propionyl-CoA:succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
MC25239_00110  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MC25239_00111  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MC25239_00108  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MC25239_00109  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MC25239_01659  fumB; Fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
MC25239_01055  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MC25239_01399  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MC25239_00993  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MC25239_00896  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MC25239_00897  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcat00010  Glycolysis / Gluconeogenesis
mcat00061  Fatty acid biosynthesis
mcat00071  Fatty acid degradation
mcat00190  Oxidative phosphorylation
mcat00220  Arginine biosynthesis
mcat00250  Alanine, aspartate and glutamate metabolism
mcat00280  Valine, leucine and isoleucine degradation
mcat00350  Tyrosine metabolism
mcat00470  D-Amino acid metabolism
mcat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system