KEGG   PATHWAY: mham00020
Entry
mham00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mannheimia haemolytica D171
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mham00020  Citrate cycle (TCA cycle)
mham00020

Module
mham_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mham00020]
mham_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mham00020]
mham_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mham00020]
mham_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mham00020]
mham_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mham00020]
Other DBs
GO: 0006099
Organism
Mannheimia haemolytica D171 [GN:mham]
Gene
J450_00855  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
J450_00845  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J450_00850  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J450_01520  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
J450_01525  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
J450_00115  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
J450_01535  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
J450_01530  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J450_06485  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
J450_06480  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
J450_06475  fumarate reductase [KO:K00246]
J450_06470  fumarate reductase [KO:K00247]
J450_06405  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J450_04395  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
J450_11705  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
J450_00105  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
J450_00110  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mham00010  Glycolysis / Gluconeogenesis
mham00053  Ascorbate and aldarate metabolism
mham00061  Fatty acid biosynthesis
mham00071  Fatty acid degradation
mham00190  Oxidative phosphorylation
mham00220  Arginine biosynthesis
mham00250  Alanine, aspartate and glutamate metabolism
mham00280  Valine, leucine and isoleucine degradation
mham00350  Tyrosine metabolism
mham00470  D-Amino acid metabolism
mham00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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