KEGG   PATHWAY: mlk00020
Entry
mlk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mustela lutreola (European mink)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mlk00020  Citrate cycle (TCA cycle)
mlk00020

Module
mlk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mlk00020]
mlk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mlk00020]
mlk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mlk00020]
mlk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mlk00020]
mlk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mlk00020]
Other DBs
GO: 0006099
Organism
Mustela lutreola (European mink) [GN:mlk]
Gene
131838599  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
131815843  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
131839531  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
131812516  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
131827510  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
131835596  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
131835476  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
131821202  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
131807960  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
131810419  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
131828711  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
131829192  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
131836868  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
131829233  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
131840372  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
131813687  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131821878  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131824109  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
131831512  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
131809129  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
131814529  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
131835909  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
131815068  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
131840193  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
131819795  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
131834614  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
131816167  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
131836383  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
131807952  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
131819649  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
131821262  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
131824073  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
131835801  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mlk00010  Glycolysis / Gluconeogenesis
mlk00053  Ascorbate and aldarate metabolism
mlk00061  Fatty acid biosynthesis
mlk00062  Fatty acid elongation
mlk00071  Fatty acid degradation
mlk00190  Oxidative phosphorylation
mlk00220  Arginine biosynthesis
mlk00250  Alanine, aspartate and glutamate metabolism
mlk00280  Valine, leucine and isoleucine degradation
mlk00350  Tyrosine metabolism
mlk00470  D-Amino acid metabolism
mlk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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