KEGG   PATHWAY: mmat00020
Entry
mmat00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium mageritense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmat00020  Citrate cycle (TCA cycle)
mmat00020

Module
mmat_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmat00020]
mmat_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmat00020]
mmat_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmat00020]
mmat_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmat00020]
mmat_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmat00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium mageritense [GN:mmat]
Gene
MMAGJ_11120  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MMAGJ_11160  citrate synthase [KO:K01647] [EC:2.3.3.1]
MMAGJ_77610  gltA1; citrate synthase [KO:K01659] [EC:2.3.3.5]
MMAGJ_61530  acnA; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MMAGJ_15350  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MMAGJ_45730  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MMAGJ_45740  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MMAGJ_16120  hypothetical protein [KO:K00658] [EC:2.3.1.61]
MMAGJ_03510  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MMAGJ_10230  acoL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMAGJ_13780  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMAGJ_16410  acoD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMAGJ_25270  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMAGJ_37890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMAGJ_76810  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MMAGJ_76800  orB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MMAGJ_08910  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MMAGJ_08920  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MMAGJ_17950  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MMAGJ_46030  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MMAGJ_46220  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
MMAGJ_17960  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MMAGJ_46020  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MMAGJ_46050  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MMAGJ_46040  succinate dehydrogenase [KO:K00242]
MMAGJ_10410  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
MMAGJ_10420  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
MMAGJ_10430  hypothetical protein [KO:K00246]
MMAGJ_10440  frdD; fumarate reductase subunit D [KO:K00247]
MMAGJ_59780  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
MMAGJ_05760  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MMAGJ_27090  mqo_1; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MMAGJ_56010  mqo_2; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MMAGJ_53950  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MMAGJ_19770  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MMAGJ_73520  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MMAGJ_16110  pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MMAGJ_10220  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MMAGJ_10210  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MMAGJ_72510  hypothetical protein [KO:K00627] [EC:2.3.1.12]
MMAGJ_10200  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MMAGJ_16400  acoC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MMAGJ_36970  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmat00010  Glycolysis / Gluconeogenesis
mmat00053  Ascorbate and aldarate metabolism
mmat00061  Fatty acid biosynthesis
mmat00071  Fatty acid degradation
mmat00190  Oxidative phosphorylation
mmat00220  Arginine biosynthesis
mmat00250  Alanine, aspartate and glutamate metabolism
mmat00280  Valine, leucine and isoleucine degradation
mmat00350  Tyrosine metabolism
mmat00470  D-Amino acid metabolism
mmat00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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