KEGG   PATHWAY: mmes00020
Entry
mmes00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylobacterium mesophilicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmes00020  Citrate cycle (TCA cycle)
mmes00020

Module
mmes_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmes00020]
mmes_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmes00020]
mmes_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmes00020]
mmes_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmes00020]
mmes_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmes00020]
Other DBs
GO: 0006099
Organism
Methylobacterium mesophilicum [GN:mmes]
Gene
MMSR116_02735  mdeB; alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
MMSR116_02745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MMSR116_03790  acnA; aconitate hydratase AcnA [KO:K27802]
MMSR116_04800  [KO:K00244] [EC:1.3.5.1]
MMSR116_04810  [KO:K01677] [EC:4.2.1.2]
MMSR116_04815  [KO:K00247]
MMSR116_04820  [KO:K00246]
MMSR116_04825  [KO:K00245] [EC:1.3.5.1]
MMSR116_09610  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MMSR116_10755  [KO:K00031] [EC:1.1.1.42]
MMSR116_15160  [KO:K01610] [EC:4.1.1.49]
MMSR116_16310  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MMSR116_16315  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
MMSR116_16320  [KO:K00239] [EC:1.3.5.1]
MMSR116_16325  [KO:K00240] [EC:1.3.5.1]
MMSR116_20635  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MMSR116_20640  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MMSR116_20645  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MMSR116_20650  [KO:K00164] [EC:1.2.4.2]
MMSR116_20655  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MMSR116_20665  [KO:K00382] [EC:1.8.1.4]
MMSR116_21010  [KO:K00382] [EC:1.8.1.4]
MMSR116_24135  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
MMSR116_26170  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MMSR116_26175  [KO:K00162] [EC:1.2.4.1]
MMSR116_26190  [KO:K00627] [EC:2.3.1.12]
MMSR116_26200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmes00010  Glycolysis / Gluconeogenesis
mmes00053  Ascorbate and aldarate metabolism
mmes00061  Fatty acid biosynthesis
mmes00071  Fatty acid degradation
mmes00190  Oxidative phosphorylation
mmes00220  Arginine biosynthesis
mmes00250  Alanine, aspartate and glutamate metabolism
mmes00280  Valine, leucine and isoleucine degradation
mmes00350  Tyrosine metabolism
mmes00470  D-Amino acid metabolism
mmes00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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