KEGG   PATHWAY: mnv00020
Entry
mnv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium noviomagense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mnv00020  Citrate cycle (TCA cycle)
mnv00020

Module
mnv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mnv00020]
mnv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mnv00020]
mnv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mnv00020]
mnv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mnv00020]
mnv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mnv00020]
Other DBs
GO: 0006099
Organism
Mycobacterium noviomagense [GN:mnv]
Gene
MNVI_01690  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MNVI_01700  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MNVI_04650  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MNVI_04690  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MNVI_06220  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MNVI_07930  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MNVI_07940  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MNVI_08570  gltA2; citrate synthase [KO:K01647] [EC:2.3.3.1]
MNVI_08610  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MNVI_19310  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MNVI_20070  [KO:K00240] [EC:1.3.5.1]
MNVI_20080  [KO:K00239] [EC:1.3.5.1]
MNVI_22580  lpdC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MNVI_27190  icd2; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MNVI_27200  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MNVI_27350  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
MNVI_27360  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MNVI_27370  sdhD; succinate dehydrogenase [KO:K00242]
MNVI_27380  [KO:K00241]
MNVI_32700  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MNVI_37060  [KO:K27802]
MNVI_37700  acn; aconitate hydratase [KO:K27802]
MNVI_44560  sucB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MNVI_45110  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mnv00010  Glycolysis / Gluconeogenesis
mnv00053  Ascorbate and aldarate metabolism
mnv00061  Fatty acid biosynthesis
mnv00071  Fatty acid degradation
mnv00190  Oxidative phosphorylation
mnv00220  Arginine biosynthesis
mnv00250  Alanine, aspartate and glutamate metabolism
mnv00280  Valine, leucine and isoleucine degradation
mnv00350  Tyrosine metabolism
mnv00470  D-Amino acid metabolism
mnv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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