KEGG   PATHWAY: moc00020
Entry
moc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Microvirga ossetica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
moc00020  Citrate cycle (TCA cycle)
moc00020

Module
moc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:moc00020]
moc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:moc00020]
moc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:moc00020]
moc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:moc00020]
moc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:moc00020]
Other DBs
GO: 0006099
Organism
Microvirga ossetica [GN:moc]
Gene
BB934_27220  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BB934_36750  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BB934_05590  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BB934_05595  hypothetical protein [KO:K01647] [EC:2.3.3.1]
BB934_16680  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BB934_12995  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BB934_20365  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BB934_14060  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BB934_14070  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BB934_27355  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB934_16045  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB934_33620  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB934_14075  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB934_14055  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BB934_14050  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BB934_14015  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BB934_14020  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BB934_14005  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BB934_14010  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BB934_19260  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BB934_14045  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BB934_11270  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BB934_33630  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BB934_13295  transketolase [KO:K00163] [EC:1.2.4.1]
BB934_27335  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BB934_27340  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BB934_27350  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
BB934_33625  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
moc00010  Glycolysis / Gluconeogenesis
moc00053  Ascorbate and aldarate metabolism
moc00061  Fatty acid biosynthesis
moc00071  Fatty acid degradation
moc00190  Oxidative phosphorylation
moc00220  Arginine biosynthesis
moc00250  Alanine, aspartate and glutamate metabolism
moc00280  Valine, leucine and isoleucine degradation
moc00350  Tyrosine metabolism
moc00470  D-Amino acid metabolism
moc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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